From f33369f89747ed27d2f7e95de6b533fd39c63302 Mon Sep 17 00:00:00 2001
From: Melissa Linkert <melissa@glencoesoftware.com>
Date: Tue, 10 Dec 2024 15:05:50 -0600
Subject: [PATCH] tiffcomment: fix `-version`, `-no-upgrade`, `-debug`,
 `-trace`

---
 .../src/loci/formats/tools/TiffComment.java    | 18 +++++++++++++++---
 1 file changed, 15 insertions(+), 3 deletions(-)

diff --git a/components/bio-formats-tools/src/loci/formats/tools/TiffComment.java b/components/bio-formats-tools/src/loci/formats/tools/TiffComment.java
index 45d5aadcc6f..a22a5a48659 100644
--- a/components/bio-formats-tools/src/loci/formats/tools/TiffComment.java
+++ b/components/bio-formats-tools/src/loci/formats/tools/TiffComment.java
@@ -40,6 +40,7 @@
 
 import loci.common.Constants;
 import loci.common.DataTools;
+import loci.common.DebugTools;
 import loci.common.RandomAccessInputStream;
 import loci.common.RandomAccessOutputStream;
 import loci.formats.FormatException;
@@ -73,8 +74,6 @@ public static void main(String[] args) throws FormatException, IOException {
       return;
     }
 
-    CommandLineTools.runUpgradeCheck(args);
-
     // parse flags
     boolean edit = false;
     String newComment = null;
@@ -106,9 +105,22 @@ else if (newComment.equals("-")) {
           }
         }
       }
-      else System.out.println("Warning: unknown flag: " + args[i]);
+      else if (args[i].equals(CommandLineTools.VERSION)) {
+        CommandLineTools.printVersion();
+      }
+      else if (args[i].equals("-debug")) {
+        DebugTools.setRootLevel("DEBUG");
+      }
+      else if (args[i].equals("-trace")) {
+        DebugTools.setRootLevel("TRACE");
+      }
+      else if (!args[i].equals(CommandLineTools.NO_UPGRADE_CHECK)) {
+        System.out.println("Warning: unknown flag: " + args[i]);
+      }
     }
 
+    CommandLineTools.runUpgradeCheck(args);
+
     // process files
     for (String file : files) {
       if (edit) {