You did not listen!... _
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... but I like you! ;)
Just try a:
git clone https://github.com/renich/shellmin.git
cd shellmin
su -c "GIT_WORK_TREE=/ git checkout -f"
I'd delete:
/.git* /INSTALL.md /LICENSE /README.md
No point on having those lying around.
Try:
shellmin list controllers
If it gives you any output that doesn't spell "Error"; you're server should still be alive. Prepare to destroy it completely...