setup.py

import setuptools

setuptools.setup(name='priori_regulon-enrichment',
      version='1.0.8',
      description="""Priori predicts transcription factor activity from RNA sequencing data using prior, literature-supported regulatory relationship information.""",
      author='Joseph Estabrook, William Yashar, Andrew Ashford, & Emek Demir',
      author_email='yashar@ohsu.edu',
      entry_points={
        'console_scripts': ['priori = priori.priori:main']
        },
      packages=setuptools.find_packages(
        where=".",
        include=['priori*'],
        exclude=["priori.tests.*", "priori.tests", "data*", "tutorial*"]),
      include_package_data=True,
      package_data={"priori":["data/PathwayCommons9.All.hgnc.sif.gz"], "priori":["data/primary_intx_regulon.pkl"]},
      url = 'https://github.com/ohsu-comp-bio/regulon-enrichment',
      classifiers = [
         "Programming Language :: Python :: 3",
         "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
         "Operating System :: OS Independent",
      ],
      install_requires=[
          'numpy>=1.19.5',
          'pandas>=1.1.5',
          'scikit-learn>=0.23.2',
          'scipy>=1.5.3',
          'tqdm>=4.64.0',
          'dill>=0.3.5.1',
          'statsmodels>=0.12.2'
        ]
     )