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‎DESCRIPTION

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Package: bfw
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Version: 0.0.1
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Date: 2018-06-09
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Title: Bayesian Framework for Computational Modelling
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Authors@R: person( "Øystein Olav","Skaar", email="[email protected]", role=c("aut","cre"))
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Maintainer: Øystein Olav Skaar <[email protected]>
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URL: https://github.com/oeysan/bfw/
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BugReports: https://github.com/oeysan/bfw/issues/
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Description: Derived from the work of Kruschke (2015), the present package aim
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to provide a framework for conducting Bayesian analysis using
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Markov chain Monte Carlo (MCMC) sampling utilizing the Just Another
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Gibbs Sampler ("JAGS", Plummer, 2003). The initial version include
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several modules for conducting Bayesian equivalents of chi-squared tests,
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analysis of variance (ANOVA), multiple (hierarchical) regression,
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and for fitting data (e.g., structural equation modeling).
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SystemRequirements: JAGS >=4.3.0 <http://mcmc-jags.sourceforge.net/>,
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Java JDK >=1.4 <https://www.java.com/en/download/manual.jsp>
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Depends: R (>= 3.4.0),
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Imports: plyr (>= 1.8.4),
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methods (>= 3.5.0),
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MASS (>= 7.3-47),
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pbapply (>= 1.3-4),
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ReporteRs (>= 0.8.9),
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coda (>= 0.19-1),
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psych (>= 1.7.8),
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rJava (>= 0.9-9),
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runjags (>= 2.0.4-2),
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ggplot2 (>= 2.2.1),
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scales (>= 0.5.0),
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truncnorm (>= 1.0-8),
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robust (>= 0.4-18),
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lavaan (>= 0.6-1)
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License: MIT + file LICENSE
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Encoding: UTF-8
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LazyData: true
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RoxygenNote: 6.0.1
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Suggests: knitr, rmarkdown
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VignetteBuilder: knitr

‎LICENSE

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YEAR: 2018
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COPYRIGHT HOLDER: �ystein Olav Skaar

‎NAMESPACE

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# Generated by roxygen2: do not edit by hand
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export(AddNames)
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export(CapWords)
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export(ComputeHDI)
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export(ContrastNames)
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export(DiagMCMC)
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export(DistinctColors)
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export(FlattenList)
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export(GammaDist)
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export(GetRange)
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export(Interleave)
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export(IsString)
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export(JavaGarbage)
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export(MatrixCombn)
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export(MergeMCMC)
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export(Normalize)
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export(PadVector)
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export(PaperSize)
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export(ParseNumber)
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export(PlotData)
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export(ReadFile)
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export(RemoveEmpty)
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export(RemoveSpaces)
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export(RunContrasts)
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export(RunMCMC)
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export(SaveName)
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export(SavePlot)
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export(StatsBernoulli)
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export(StatsCovariate)
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export(StatsFit)
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export(StatsKappa)
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export(StatsMean)
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export(StatsMetric)
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export(StatsNominal)
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export(StatsRegression)
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export(StatsSoftmax)
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export(SumMCMC)
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export(SumToZero)
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export(Trim)
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export(TrimSplit)
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export(VectorSub)
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export(bfw)
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importFrom(MASS,mvrnorm)
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importFrom(ReporteRs,addPlot)
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importFrom(ReporteRs,addSlide)
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importFrom(ReporteRs,pptx)
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importFrom(ReporteRs,writeDoc)
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importFrom(coda,as.mcmc.list)
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importFrom(coda,effectiveSize)
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importFrom(coda,gelman.plot)
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importFrom(coda,traceplot)
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importFrom(coda,varnames)
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importFrom(ggplot2,aes)
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importFrom(ggplot2,element_blank)
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importFrom(ggplot2,element_line)
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importFrom(ggplot2,element_rect)
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importFrom(ggplot2,element_text)
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importFrom(ggplot2,geom_boxplot)
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importFrom(ggplot2,geom_errorbar)
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importFrom(ggplot2,geom_line)
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importFrom(ggplot2,geom_ribbon)
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importFrom(ggplot2,geom_violin)
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importFrom(ggplot2,ggplot)
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importFrom(ggplot2,ggproto)
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importFrom(ggplot2,labs)
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importFrom(ggplot2,layer)
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importFrom(ggplot2,scale_fill_manual)
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importFrom(ggplot2,scale_x_discrete)
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importFrom(ggplot2,theme)
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importFrom(grDevices,colorRampPalette)
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importFrom(grDevices,dev.list)
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importFrom(grDevices,dev.new)
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importFrom(grDevices,dev.off)
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importFrom(grDevices,graphics.off)
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importFrom(grDevices,recordPlot)
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importFrom(grDevices,setEPS)
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importFrom(graphics,abline)
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importFrom(graphics,layout)
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importFrom(graphics,matplot)
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importFrom(graphics,mtext)
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importFrom(graphics,par)
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importFrom(graphics,plot.new)
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importFrom(graphics,points)
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importFrom(graphics,text)
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importFrom(grid,grobName)
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importFrom(grid,grobTree)
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importFrom(grid,unit)
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importFrom(methods,formalArgs)
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importFrom(parallel,detectCores)
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importFrom(pbapply,pblapply)
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importFrom(plyr,arrange)
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importFrom(rJava,.jcall)
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importFrom(robust,covRob)
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importFrom(runjags,combine.mcmc)
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importFrom(runjags,run.jags)
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importFrom(runjags,runjags.options)
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importFrom(scales,zero_range)
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importFrom(stats,acf)
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importFrom(stats,aggregate)
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importFrom(stats,approxfun)
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importFrom(stats,complete.cases)
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importFrom(stats,cor)
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importFrom(stats,cov)
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importFrom(stats,density)
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importFrom(stats,median)
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importFrom(stats,na.omit)
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importFrom(stats,sd)
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importFrom(utils,capture.output)
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importFrom(utils,combn)
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importFrom(utils,modifyList)
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importFrom(utils,read.csv)
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importFrom(utils,tail)
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importFrom(utils,write.table)

‎NEWS.md

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# bfw 0.0.1
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* Initial launch with the following modules:
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** Bernoulli trials
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** Covariate estimations (including correlelation and Cronbach's alpha)
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** Fit data (e.g., SEM, CFA, mediation models)
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** Bayesian equivalent of Cohen's kappa
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** Mean and standard deviation estimations
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** Predict metric values (cf., ANOVA)
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** Predict nominal values (c.f., chi-square test)
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** Simple, multiple and hierarchical regression
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** Softmax regression (i.e., multinomial logistic regression)
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* Added a `NEWS.md` file to track changes to the package.
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* Added a `TODO.md` file to track future work on the package.
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* Added a `README.md` file as an introduction to the package.

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