pyproject.toml

[build-system]
build-backend = "setuptools.build_meta"
requires = [
    "setuptools",
    "setuptools-scm",
]

[project]
authors = [
    {email = "a.lowe@ucl.ac.uk", name = "Alan R. Lowe"},
]
classifiers = [
    "Framework :: napari",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Programming Language :: C++",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Image Recognition",
    "Topic :: Scientific/Engineering :: Visualization",
]
dependencies = [
    "cvxopt>=1.3.1",
    "h5py>=2.10.0",
    "numpy>=1.17.3",
    "pandas>=2.0.3",
    "pooch>=1.0.0",
    "pydantic<2",
    "scikit-image>=0.16.2",
    "scipy>=1.3.1",
    "tqdm>=4.65.0",
]
description = "A framework for Bayesian multi-object tracking"
dynamic = [
    "version",
]
name = "btrack"
optional-dependencies = {"dev" = [
    "black",
    "pre-commit",
    "ruff",
], docs = [
    "numpydoc",
    "pytz",
    "sphinx",
    "sphinx-automodapi",
    "sphinx-panels",
    "sphinx_rtd_theme",
], napari = [
    "magicgui>=0.5.0",
    "napari-plugin-engine>=0.1.4",
    "napari>=0.4.16",
    "qtpy",
]}
readme = "README.md"
requires-python = ">=3.9"
entry-points."napari.manifest".btrack = "btrack:napari.yaml"
license.file = "LICENSE.md"
urls.bugtracker = "https://github.com/quantumjot/btrack/issues"
urls.documentation = "https://btrack.readthedocs.io"
urls.homepage = "https://github.com/quantumjot/btrack"
urls.usersupport = "https://github.com/quantumjot/btrack/discussions"

[tool.coverage]
report = {skip_covered = true, sort = "cover"}
run = {branch = true, parallel = true, source = [
    "btrack",
]}
paths.source = [
    "btrack",
    ".tox*/*/lib/python*/site-packages",
]

[tool.pytest.ini_options]
addopts = "--color=yes -ra -v"
testpaths = [
    "tests",
]

[tool.ruff]
fix = true
force-exclude = true
ignore = [
    "B905", # python>=3.10
    "EM101",
    "EM102",
    "N802",
    "N803",
    "N806",
    "S101",
    "UP006",
    "UP007",
    "UP015",
]
per-file-ignores = {"__init__.py" = [
    "F401", # unused-import
], "test_*.py" = [
    "S101", # use of 'assert'
]}
select = [
    "A",
    "B",
    "C",
    "DTZ",
    "E",
    "EM",
    "F",
    "FBT",
    "I",
    "ICN",
    "ISC",
    "N",
    "PLC",
    "PLE",
    "PLR",
    "PLW",
    "Q",
    "RUF",
    "S",
    "SIM",
    "T",
    "TID",
    "UP",
    "W",
    "YTT",
]
target-version = "py39"
isort.known-first-party = [
    "black",
]
isort.section-order = [
    "future",
    "standard-library",
    "third-party",
    "napari",
    "first-party",
    "local-folder",
]
isort.sections.napari = [
    "magicgui",
    "napari",
]
mccabe.max-complexity = 18
pep8-naming.classmethod-decorators = [
    "classmethod",
    "pydantic.root_validator",
    "pydantic.validator",
]

[tool.setuptools]
packages.find = {}

[tool.setuptools_scm]
local_scheme = "no-local-version"
write_to = "btrack/_version.py"

[tool.tomlsort]
all = true
spaces_indent_inline_array = 4
trailing_comma_inline_array = true
overrides."project.classifiers".inline_arrays = false
overrides."tool.black.target-version".inline_arrays = false
overrides."tool.coverage.paths.source".inline_arrays = false
overrides."tool.ruff.isort.section-order".inline_arrays = false

[tool.tox]
legacy_tox_ini = """
    [gh-actions]
    python =
        3.9: py39
        3.10: py310
        3.11: py311

    [gh-actions:env]
    OS =
        ubuntu-latest: linux
        macos-latest: macos
        windows-latest: windows

    [testenv]
    commands = pytest --cov --cov-report=xml
    deps =
        napari
        pyqt5
        pytest-cov
        pytest-qt
        pytest-xvfb ; sys_platform == 'linux'
    passenv =
        CI
        DISPLAY
        GITHUB_ACTIONS
        NUMPY_EXPERIMENTAL_ARRAY_FUNCTION
        PYVISTA_OFF_SCREEN
        XAUTHORITY

    [tox]
    envlist = py{39,310,311}-{linux,macos,windows}
"""