Merge pull request #2 from effigies/test/ci

TEST: Get CI running clean

Author: effigies

.github/workflows/pythonpackage.yml

@@ -29,4 +29,4 @@ jobs:
         pip install ".[dev]"
     - name: Test with pytest
       run: |
-        pytest --doctest-modules pydra/tasks/nipype1
+        pytest -sv --doctest-modules pydra/tasks/nipype1

pydra/tasks/nipype1/utils.py

@@ -16,7 +16,27 @@ def traitedspec_to_specinfo(traitedspec):
 
 
 class Nipype1Task(pydra.engine.task.TaskBase):
-    """Wrap a Python callable as a task element."""
+    """Wrap a Nipype 1.x Interface as a Pydra Task
+
+    This utility translates the Nipype 1 input and output specs to
+    Pydra-style specs, wraps the run command, and exposes the output
+    in Pydra Task outputs.
+
+    >>> import pytest
+    >>> from pkg_resources import resource_filename
+    >>> from nipype.interfaces import fsl
+    >>> if fsl.Info.version() is None:
+    ...     pytest.skip()
+    >>> img = resource_filename('nipype', 'testing/data/tpms_msk.nii.gz')
+
+    >>> from pydra.tasks.nipype1.utils import Nipype1Task
+    >>> thresh = Nipype1Task(fsl.Threshold())
+    >>> thresh.inputs.in_file = img
+    >>> thresh.inputs.thresh = 0.5
+    >>> res = thresh()
+    >>> res.output.out_file  # DOCTEST: +ELLIPSIS
+    '.../tpms_msk_thresh.nii.gz'
+    """
 
     def __init__(
         self,

setup.cfg

@@ -6,7 +6,7 @@ description = Tools for importing nipype 1.x interfaces into Pydra
 [options]
 python_requires = >=3.7
 install_requires =
-    pydra
+    pydra @ git+https://github.com/effigies/pydra.git@85f9eeae02ec6b6c6893b8216b4e1f97219c7e2c
     nipype
 packages = pydra.tasks.nipype1