diff --git a/.github/workflows/ci-cd.yml b/.github/workflows/ci-cd.yml
index 02d8ca6..42ba5e8 100644
--- a/.github/workflows/ci-cd.yml
+++ b/.github/workflows/ci-cd.yml
@@ -37,7 +37,7 @@ jobs:
     strategy:
       matrix:
         os: [macos-latest, ubuntu-latest]
-        python-version: ["3.8", "3.11"]
+        python-version: ["3.8", "3.12"]
       fail-fast: false
     runs-on: ${{ matrix.os }}
     defaults:
@@ -120,7 +120,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: '3.11'
+        python-version: '3.12'
 
     - name: Install build tools
       run: python3 -m pip install --break-system-packages build twine
diff --git a/nipype2pydra/cli/convert.py b/nipype2pydra/cli/convert.py
index a50c27e..e7504fa 100644
--- a/nipype2pydra/cli/convert.py
+++ b/nipype2pydra/cli/convert.py
@@ -69,7 +69,7 @@ def convert(
         shutil.rmtree(package_dir / "auto")
     else:
         for fspath in package_dir.iterdir():
-            if fspath == package_dir / "__init__.py":
+            if fspath in (package_dir / "__init__.py", package_dir / "_version.py"):
                 continue
             if fspath.is_dir():
                 shutil.rmtree(fspath)
diff --git a/nipype2pydra/tests/test_package.py b/nipype2pydra/tests/test_package.py
index fbbebbb..daf1094 100644
--- a/nipype2pydra/tests/test_package.py
+++ b/nipype2pydra/tests/test_package.py
@@ -52,7 +52,6 @@ def package_spec(request):
     return EXAMPLE_PKG_GEN_DIR / f"{request.param}.yaml"
 
 
-@pytest.mark.xfail(reason="Don't have time to debug at the moment")
 def test_package_complete(package_spec, cli_runner, tmp_path, tasks_template_args):
     pkg_name = package_spec.stem
     repo_output = tmp_path / "repo"