pyproject.toml

[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"

[project]
name = "niworkflows"
dynamic = ["version"]
description = "NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain."
readme = "README.rst"
license = {file = "LICENSE"}
requires-python = ">= 3.9"
authors = [
    { name = "The NiPreps Developers", email = "nipreps@gmail.com" },
]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Apache Software License",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Image Recognition",
]
dependencies = [
    "acres",
    "attrs",
    "importlib_resources >= 5.7; python_version < '3.11'",
    "jinja2",
    "looseversion",
    "matplotlib >= 3.4.2",
    "nibabel >= 3.0",
    "nilearn >= 0.5.2",
    "nipype >= 1.8.5",
    "nitransforms >= 21.0.0",
    "numpy",
    "packaging",
    "pandas",
    "pybids >= 0.15.1",
    "PyYAML",
    "scikit-image",
    "scipy",
    "seaborn",
    "svgutils >= 0.3.4",
    "templateflow >= 0.7.2",
    "transforms3d",
]

[project.optional-dependencies]
doc = [
    "furo",
    "pydot >= 1.2.3",
    "pydotplus",
    "sphinx",
    "sphinxcontrib-apidoc",
    "sphinxcontrib-napoleon",
]
pointclouds = [
    "pyntcloud",
]
style = [
    "flake8 >= 3.7.0",
]
tests = [
    "coverage >=5.2.1",
    "pytest >= 4.4",
    "pytest-cov",
    "pytest-env",
    "pytest-xdist >= 1.28",
    "pytest-xvfb",
]
# Aliases
all = ["niworkflows[doc,pointclouds,style,tests]"]
docs = ["niworkflows[doc]"]

[project.scripts]
niworkflows-boldref = "niworkflows.cli.boldref:main"

[project.urls]
"Bug Tracker" = "https://github.com/nipreps/niworkflows/issues"
Documentation = "https://www.nipreps.org/niworkflows"
GitHub = "https://github.com/nipreps/niworkflows"
Homepage = "https://www.nipreps.org"
"Source Code" = "https://github.com/nipreps/niworkflows"
Zenodo = "https://doi.org/10.5281/zenodo.2650331"

#
# Hatch configurations
#

[tool.hatch.metadata]
allow-direct-references = true

[tool.hatch.build.targets.sdist]
exclude = [".git_archival.txt"]  # No longer needed in sdist

[tool.hatch.build.targets.wheel]
packages = ["niworkflows"]
exclude = [
    "niworkflows/data/tests/work",  # Large test data directory
]

##  The following two sections configure setuptools_scm in the hatch way

[tool.hatch.version]
source = "vcs"
raw-options = {version_scheme = "release-branch-semver" }

[tool.hatch.build.hooks.vcs]
version-file = "niworkflows/_version.py"

[tool.black]
line-length = 99
target-version = ['py37']
skip-string-normalization = true
extend-exclude = '_version.py'

[tool.pytest.ini_options]
norecursedirs = ".git"
addopts = "-sv --doctest-modules"
doctest_optionflags = "ALLOW_UNICODE NORMALIZE_WHITESPACE ELLIPSIS"
env = """
    PYTHONHASHSEED=0
"""
filterwarnings = """
    ignore::DeprecationWarning
"""
junit_family = "xunit2"

[tool.coverage.run]
branch = true
omit = [
    "*/tests/*",
    "niworkflows/_version.py",
    "niworkflows/conftest.py",
]

[tool.coverage.report]
# Regexes for lines to exclude from consideration
exclude_lines = [
    "raise NotImplementedError",
    "warnings\\.warn",
]