diff --git a/src/fmripost_aroma/workflows/base.py b/src/fmripost_aroma/workflows/base.py index 1e5ec14..0005f80 100644 --- a/src/fmripost_aroma/workflows/base.py +++ b/src/fmripost_aroma/workflows/base.py @@ -320,7 +320,7 @@ def init_single_subject_wf(subject_id: str): for bold_file in subject_data["bold"]: functional_cache = {} if config.execution.derivatives: - # Collect native-space derivatives and warp them to MNI152NLin6Asym + # Collect native-space derivatives and transforms from fmripost_aroma.utils.bids import collect_derivatives, extract_entities entities = extract_entities(bold_file) @@ -333,11 +333,13 @@ def init_single_subject_wf(subject_id: str): ) ) else: - # Collect standard-space derivatives + # Only derivatives dataset was passed in, so we expected standard-space derivatives from fmripost_aroma.utils.bids import collect_derivatives ... + # Resample the BOLD series to MNI152NLin6Asym-2mm + # Run ICA-AROMA using MNI152NLin6Asym-2mm BOLD data ica_aroma_wf = init_ica_aroma_wf( bold_file=bold_file, @@ -358,6 +360,8 @@ def init_single_subject_wf(subject_id: str): if config.workflow.denoise_method: # Warp the BOLD series to requested output spaces + # XXX: Probably should just grab the MNI152NLin6Asym-2mm file if that + # space+resolution is requested. # Run the denoising workflow on each requested BOLD series denoise_wf = init_denoise_wf(bold_file=bold_file)