Switches to a wrong window after a password entry popup

[nickkadutskyi]

Describe the bug
I have this integration in my shell where sudo prompts FaceId entry on my Mac, also I have 1Password ssh integration which also creates a popup for approval when I run ssh commands.
The problem is that when I type a password or use fingerprint reader popup is closing and I focus switches to a wrong terminal window.
Here is a screencast:
https://github.com/user-attachments/assets/8e6df2d5-9d90-48f6-a798-4485c5d2e692
Here is another screencast with more windows:
https://github.com/user-attachments/assets/36614853-9712-4612-be9d-31a9c5f00c71
It seems like it switches to the last opened window in that case and not the last focused.

Related issues you could find
This issue might be related: #571

[ntawileh]

I have a possibly related issue also involving the Mac password popup. I typically have different Chrome windows in different spaces (work vs. personal).

Chrome activity triggers the Mac sudo popup (like Chrome needing to pull a password for a site I'm logging in to)
I auth using the Mac sudo popup. As soon as that popup closes, aerospace pulls a Chrome window that was in another space and brings it in to the current space. Either that, or the current chrome window that I was in just moves to another space where other Chrome windows are.