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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(plot,bioTMLE)
export(.biotmle)
export(biomarkertmle)
export(eif)
export(heatmap_ic)
export(modtest_ic)
export(rnaseq_ic)
export(toptable)
export(volcano_ic)
exportClasses(bioTMLE)
exportClasses(data.frame_OR_EList)
import(BiocGenerics)
importClassesFrom(S4Vectors,Annotated)
importClassesFrom(S4Vectors,Vector)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importClassesFrom(limma,EList)
importClassesFrom(methods,data.frame)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpprogressbar)
importFrom(BiocParallel,register)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(assertthat,assert_that)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(drtmle,drtmle)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggsci,scale_fill_gsea)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(limma,voomWithQualityWeights)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(stats,p.adjust)
importFrom(stats,plogis)
importFrom(stats,quantile)
importFrom(superheat,superheat)
importFrom(tibble,as_tibble)
importFrom(tibble,rownames_to_column)