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add the instructions for trimmed option
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README.md

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@@ -17,5 +17,15 @@ nextflow run https://github.com/nextflow-hub/trimmed_gunzip_fqgz
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You will see the execution of a `gzip` process.
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## Options
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**NOTE**: In this script, it stores the result files locally into `results/gzip` directory.
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- `trimmed` and `untrimmed` input files
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By default the pipeline assumes the files to follow the `*.p.fastq.gz` format. For untrimmed files i.e. `*.fastq.gz` pattern simply add the `trimmed` option as false.
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```
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nextflow run https://github.com/nextflow-hub/trimmed_gunzip_fqgz --trimmed false
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```
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**NOTE**: By default stores the result files locally into `results/gzip` directory.

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