You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: README.md
+11-1Lines changed: 11 additions & 1 deletion
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -17,5 +17,15 @@ nextflow run https://github.com/nextflow-hub/trimmed_gunzip_fqgz
17
17
18
18
You will see the execution of a `gzip` process.
19
19
20
+
## Options
20
21
21
-
**NOTE**: In this script, it stores the result files locally into `results/gzip` directory.
22
+
-`trimmed` and `untrimmed` input files
23
+
24
+
By default the pipeline assumes the files to follow the `*.p.fastq.gz` format. For untrimmed files i.e. `*.fastq.gz` pattern simply add the `trimmed` option as false.
25
+
26
+
```
27
+
nextflow run https://github.com/nextflow-hub/trimmed_gunzip_fqgz --trimmed false
28
+
```
29
+
30
+
31
+
**NOTE**: By default stores the result files locally into `results/gzip` directory.
0 commit comments