From 29fa832deea34013cc7a461acda2e0440385b69a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Langer?= <61791748+bjlang@users.noreply.github.com> Date: Mon, 26 Aug 2024 18:06:29 +0200 Subject: [PATCH 1/6] Create SIG_animalgenomics_Sept.md --- .../events/2024/SIG_animalgenomics_Sept.md | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md diff --git a/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md new file mode 100644 index 0000000000..59ae022628 --- /dev/null +++ b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md @@ -0,0 +1,18 @@ +--- +title: '#animal-genomics: September Meeting' +subtitle: Guillaume Devailly (INRAE, France) + +type: talk +startDate: '2024-09-18' +startTime: '16:00+02:00' +endDate: '2024-09-18' +endTime: '17:00+02:00' +locations: + - name: Online + links: + - https://rediris.zoom.us/j/96065549412?pwd=L2txanpQMEFTOWVLNmtIZyt6M3NnUT09 +--- + +September 2024 talk of the monthly meeting of the _#animal-genomics_ special interest group. +In this talk, **Guillaume Devailly** (INRAE, France) will present **Automatic visualisation of FAANG data**: +__ From 1aee3203dbdce841b0795d2a7ba7b18dabba8016 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Langer?= <61791748+bjlang@users.noreply.github.com> Date: Mon, 26 Aug 2024 18:06:45 +0200 Subject: [PATCH 2/6] Update meetings.md --- .../content/special-interest-groups/animal-genomics/meetings.md | 1 + 1 file changed, 1 insertion(+) diff --git a/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md b/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md index 04d0a38963..7a45ea1cd3 100644 --- a/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md +++ b/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md @@ -15,6 +15,7 @@ of every month at 4 PM CET / 10 AM EDT / 7 AM PDT for 1h. | May 15 | Alessandro Bagnato (Department of Veterinary Medicine, University of Milan, Italy) | [May Meeting](/events/2024/SIG_animalgenomics_May) | | Jun 19 | Yuliaxis Ramayo-Caldas (HoloRuminant; Institute of Agrifood Research and Technology (IRTA), Spain) | [June Meeting](/events/2024/SIG_animalgenomics_June) | | Jul 17 | Cristina Casto Rebollo (Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, Spain) | [July Meeting](/events/2024/SIG_animalgenomics_July) | +| Sep 18 | Guillaume Devailly (INRAE, France) | [September Meeting](/events/2024/SIG_animalgenomics_Sept) | # How to join From 90747783c4d0348abd188a99b1c77c59a07c7e4f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Langer?= <61791748+bjlang@users.noreply.github.com> Date: Mon, 26 Aug 2024 18:14:25 +0200 Subject: [PATCH 3/6] Update meetings.md --- .../content/special-interest-groups/animal-genomics/meetings.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md b/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md index 7a45ea1cd3..23ab6d98c7 100644 --- a/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md +++ b/sites/main-site/src/content/special-interest-groups/animal-genomics/meetings.md @@ -16,6 +16,8 @@ of every month at 4 PM CET / 10 AM EDT / 7 AM PDT for 1h. | Jun 19 | Yuliaxis Ramayo-Caldas (HoloRuminant; Institute of Agrifood Research and Technology (IRTA), Spain) | [June Meeting](/events/2024/SIG_animalgenomics_June) | | Jul 17 | Cristina Casto Rebollo (Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, Spain) | [July Meeting](/events/2024/SIG_animalgenomics_July) | | Sep 18 | Guillaume Devailly (INRAE, France) | [September Meeting](/events/2024/SIG_animalgenomics_Sept) | +| Oct 16 | Roderic Guigó Serra (CRG, Spain) | TBA | +| Nov 20 | Harris Lewin (Arizona State University, USA | TBA | # How to join From f139e48bf440e4fae9fb0b9c77d42fb3b642d6ab Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Langer?= <61791748+bjlang@users.noreply.github.com> Date: Tue, 27 Aug 2024 09:21:58 +0200 Subject: [PATCH 4/6] Apply suggestions from code review --- .../src/content/events/2024/SIG_animalgenomics_Sept.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md index 59ae022628..3716c87c21 100644 --- a/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md +++ b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md @@ -15,4 +15,4 @@ locations: September 2024 talk of the monthly meeting of the _#animal-genomics_ special interest group. In this talk, **Guillaume Devailly** (INRAE, France) will present **Automatic visualisation of FAANG data**: -__ +_
The FAANG data portal offers a great curation of transcriptomic and epigenomic data from livestock species. We would like to improve FAANG data re-use by offering automatic visualisations of available datasets: sample - sample correlation heatmaps, genomic stacks at interesting features (peak center, transcription start site, CpG island, ...). We therefore need to automatically process FAANG dataset using a Nextflow pipeline and could provide uniformly processed files and QC reports as useful artifacts. While an initial protoype is available, help is needed to sustain this development.
_ From d138a93cd22a69a2f4cbc2903435e0803796a6ca Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Langer?= <61791748+bjlang@users.noreply.github.com> Date: Tue, 27 Aug 2024 11:29:28 +0200 Subject: [PATCH 5/6] Update sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Matthias Hörtenhuber --- .../src/content/events/2024/SIG_animalgenomics_Sept.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md index 3716c87c21..69dddd07e6 100644 --- a/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md +++ b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md @@ -15,4 +15,4 @@ locations: September 2024 talk of the monthly meeting of the _#animal-genomics_ special interest group. In this talk, **Guillaume Devailly** (INRAE, France) will present **Automatic visualisation of FAANG data**: -_
The FAANG data portal offers a great curation of transcriptomic and epigenomic data from livestock species. We would like to improve FAANG data re-use by offering automatic visualisations of available datasets: sample - sample correlation heatmaps, genomic stacks at interesting features (peak center, transcription start site, CpG island, ...). We therefore need to automatically process FAANG dataset using a Nextflow pipeline and could provide uniformly processed files and QC reports as useful artifacts. While an initial protoype is available, help is needed to sustain this development.
_ +
The FAANG data portal offers a great curation of transcriptomic and epigenomic data from livestock species. We would like to improve FAANG data re-use by offering automatic visualisations of available datasets: sample - sample correlation heatmaps, genomic stacks at interesting features (peak center, transcription start site, CpG island, ...). We therefore need to automatically process FAANG dataset using a Nextflow pipeline and could provide uniformly processed files and QC reports as useful artifacts. While an initial protoype is available, help is needed to sustain this development.
From e4596a58fe21a98f7c70fbe6cc00fd0c47dfa23a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Langer?= <61791748+bjlang@users.noreply.github.com> Date: Tue, 27 Aug 2024 11:32:51 +0200 Subject: [PATCH 6/6] fix linting --- .../main-site/src/content/events/2024/SIG_animalgenomics_Sept.md | 1 + 1 file changed, 1 insertion(+) diff --git a/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md index 69dddd07e6..013d5d2d41 100644 --- a/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md +++ b/sites/main-site/src/content/events/2024/SIG_animalgenomics_Sept.md @@ -15,4 +15,5 @@ locations: September 2024 talk of the monthly meeting of the _#animal-genomics_ special interest group. In this talk, **Guillaume Devailly** (INRAE, France) will present **Automatic visualisation of FAANG data**: +
The FAANG data portal offers a great curation of transcriptomic and epigenomic data from livestock species. We would like to improve FAANG data re-use by offering automatic visualisations of available datasets: sample - sample correlation heatmaps, genomic stacks at interesting features (peak center, transcription start site, CpG island, ...). We therefore need to automatically process FAANG dataset using a Nextflow pipeline and could provide uniformly processed files and QC reports as useful artifacts. While an initial protoype is available, help is needed to sustain this development.