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Add support for SDRF input

enhancementNew feature or requestNew feature or request

Status: Open.

#277 In nf-core/mhcquant;

· jonasscheid opened on Jul 25, 2023

Remove writing out all peaks when using Ion Annotator

enhancementNew feature or requestNew feature or request

Status: Open.

#286 In nf-core/mhcquant;

· jonasscheid opened on Oct 8, 2023

Re-add optional vcf input for sample-specific database generation and search

enhancementNew feature or requestNew feature or request

Status: Open.

#377 In nf-core/mhcquant;

· jonasscheid opened on May 28, 2025

Update docs with new subworkflows

Status: Open.

#398 In nf-core/mhcquant;

· jonasscheid opened on Sep 15, 2025

Stripping sequence in SUMMARIZE_RESULTS is errorneous for complex mods

bugSomething isn't workingSomething isn't working

Status: Open.

#428 In nf-core/mhcquant;

· jonasscheid opened on Jan 4, 2026

Skip quantification if FDR-filtered list is empty

enhancementNew feature or requestNew feature or request

Status: Open.

#427 In nf-core/mhcquant;

· jonasscheid opened on Jan 4, 2026

Support quantification of single MS runs

enhancementNew feature or requestNew feature or request

Status: Open.

#437 In nf-core/mhcquant;

· jonasscheid opened on Jan 15, 2026