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Add snpEff support

DSL2

enhancementNew feature or requestNew feature or request

feature

Status: Open.

#264 In nf-core/eager;

· jfy133 opened on Oct 29, 2019

DSL2: PMDTools for estimation vs manipulation of damage

DSL2

Status: Open.

#989 In nf-core/eager;

· TCLamnidis opened on May 26, 2023

DSL2: Provide correct data for upload to sequencing archives (e.g. ENA)

DSL2

enhancementNew feature or requestNew feature or request

Status: Open.

#974 In nf-core/eager;

· TCLamnidis opened on May 2, 2023

DSL2L: Add support for specifying platform in input TSV

DSL2

enhancementNew feature or requestNew feature or request

Status: Open.

#970 In nf-core/eager;

· jfy133 opened on Apr 21, 2023

Mitochondrial and Ych haplotype callers

DSL2

enhancementNew feature or requestNew feature or request

Status: Open.

#917 In nf-core/eager;

· SalWas1 opened on Sep 6, 2022

Consider competitive mapping for contaminant removal

enhancementNew feature or requestNew feature or request

feature

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#618 In nf-core/eager;

· apeltzer opened on Dec 1, 2020

DSL2: Genotyping on multiple snp sets in one run?

DSL2

enhancementNew feature or requestNew feature or request

Status: Open.

#1077 In nf-core/eager;

· TCLamnidis opened on Jun 21, 2024