{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":135918251,"defaultBranch":"master","name":"eager","ownerLogin":"nf-core","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-06-03T15:52:24.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/35520196?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1721911342.0","currentOid":""},"activityList":{"items":[{"before":"bcc3baf90acfdb1c2ea99cee47f203b3675a3bed","after":"0b58cf7d57aa3f94128856948aa95c8002498217","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-26T12:35:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Backing up TODO notes","shortMessageHtmlLink":"Backing up TODO notes"}},{"before":"d41aad9328e2fd23013f89c3597652cd556c81e9","after":"bcc3baf90acfdb1c2ea99cee47f203b3675a3bed","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-26T10:04:16.000Z","pushType":"push","commitsCount":18,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Start adding preprocessing dir but diff not working so can't ser variability","shortMessageHtmlLink":"Start adding preprocessing dir but diff not working so can't ser vari…"}},{"before":"7765f161a9195ab2ede30b1c44c8f9d68d7e04dc","after":null,"ref":"refs/heads/fix_bam_filtering","pushedAt":"2024-07-25T12:42:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"TCLamnidis","name":"Thiseas C. Lamnidis","path":"/TCLamnidis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22079185?s=80&v=4"}},{"before":"0e0fe5ebfabb592b22490cb0866bf43184aeb6ed","after":"0ceda2cf7c4b69c2f0517ae35e92b51669c5771c","ref":"refs/heads/dev","pushedAt":"2024-07-25T12:42:21.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"TCLamnidis","name":"Thiseas C. Lamnidis","path":"/TCLamnidis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22079185?s=80&v=4"},"commit":{"message":"Merge pull request #1080 from nf-core/fix_bam_filtering\n\nFix bam filtering","shortMessageHtmlLink":"Merge pull request #1080 from nf-core/fix_bam_filtering"}},{"before":"2fe53bd3db86e78e8ced2ca58ab18325ff46c5e0","after":"7765f161a9195ab2ede30b1c44c8f9d68d7e04dc","ref":"refs/heads/fix_bam_filtering","pushedAt":"2024-07-25T12:17:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"TCLamnidis","name":"Thiseas C. Lamnidis","path":"/TCLamnidis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22079185?s=80&v=4"},"commit":{"message":"pick up csi indices for SAMTOOLS_FLAGSTATS_BAM_INPUT","shortMessageHtmlLink":"pick up csi indices for SAMTOOLS_FLAGSTATS_BAM_INPUT"}},{"before":"a2fff876585bb972a19303ce7f0a107fe9edd8b4","after":"2fe53bd3db86e78e8ced2ca58ab18325ff46c5e0","ref":"refs/heads/fix_bam_filtering","pushedAt":"2024-07-25T12:15:36.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"TCLamnidis","name":"Thiseas C. Lamnidis","path":"/TCLamnidis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22079185?s=80&v=4"},"commit":{"message":"Revert \"dummy commit to restart github actions\"\n\nThis reverts commit e2db18fd18daaa3b8bdae51c112f4660f9af6c54.","shortMessageHtmlLink":"Revert \"dummy commit to restart github actions\""}},{"before":null,"after":"a2fff876585bb972a19303ce7f0a107fe9edd8b4","ref":"refs/heads/fix_bam_filtering","pushedAt":"2024-07-25T12:09:03.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"TCLamnidis","name":"Thiseas C. Lamnidis","path":"/TCLamnidis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22079185?s=80&v=4"},"commit":{"message":"support csi indexes","shortMessageHtmlLink":"support csi indexes"}},{"before":"0f12b21fc81e2690db22c355c11e1c5d0eaaf75e","after":"d41aad9328e2fd23013f89c3597652cd556c81e9","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-22T07:07:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Sort file name only funciton","shortMessageHtmlLink":"Sort file name only funciton"}},{"before":"56cba0cac8fb38e5aaba72f1c34089d993e4257c","after":"0f12b21fc81e2690db22c355c11e1c5d0eaaf75e","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-22T06:52:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Sort output to ensure consistency","shortMessageHtmlLink":"Sort output to ensure consistency"}},{"before":"a8dcd649176fee526a1a93b87cfcd5d8a4d88df2","after":"56cba0cac8fb38e5aaba72f1c34089d993e4257c","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-20T06:58:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"And get it back again","shortMessageHtmlLink":"And get it back again"}},{"before":"cac81523e053e3998a2bdb22f9b3b874c1913ae0","after":"a8dcd649176fee526a1a93b87cfcd5d8a4d88df2","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-20T06:52:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Update MQC so works on gitpod, try to re-add original getAllFilesFromDir (but not working - no md5swum?!)","shortMessageHtmlLink":"Update MQC so works on gitpod, try to re-add original getAllFilesFrom…"}},{"before":"b795b9ed9003c0d8573813ed78b5d91ccbedbaeb","after":"cac81523e053e3998a2bdb22f9b3b874c1913ae0","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-19T14:41:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"TODO","shortMessageHtmlLink":"TODO"}},{"before":"de035ca4f05d3f43bd7bfe8744914d9f1d32af1a","after":"b795b9ed9003c0d8573813ed78b5d91ccbedbaeb","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-19T14:39:36.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Get working string check function!","shortMessageHtmlLink":"Get working string check function!"}},{"before":"c0f93d9b7000489a0167eedd55577fd9381aafe9","after":"de035ca4f05d3f43bd7bfe8744914d9f1d32af1a","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-19T14:16:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Extract names properly","shortMessageHtmlLink":"Extract names properly"}},{"before":"e07dc0611f630c22f4b29ec73b84217f295e4951","after":"c0f93d9b7000489a0167eedd55577fd9381aafe9","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-19T14:09:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Get working function properly, and start integrating into snapshot: problem with collection/name not working","shortMessageHtmlLink":"Get working function properly, and start integrating into snapshot: p…"}},{"before":"37994df02d16e8622e4d1c24852883c315c97df6","after":"e07dc0611f630c22f4b29ec73b84217f295e4951","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-19T10:05:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Get working function","shortMessageHtmlLink":"Get working function"}},{"before":"cc114f388184254d31038a8257f7f1870558bb9e","after":"37994df02d16e8622e4d1c24852883c315c97df6","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-07-19T10:05:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"More debugging","shortMessageHtmlLink":"More debugging"}},{"before":"5414f06c0f6d0c8b9152337c6a23d2c58cddb675","after":"fad1e13c8a42a9a6059a26ee909689d3e1e3e340","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-07-19T09:29:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ilight1542","name":"Ian Light","path":"/ilight1542","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/86308592?s=80&v=4"},"commit":{"message":"applied style and naming changes from PR","shortMessageHtmlLink":"applied style and naming changes from PR"}},{"before":"7e41a189f7aa3b7e8d6bedf390402846e05cdec0","after":"5414f06c0f6d0c8b9152337c6a23d2c58cddb675","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-07-05T09:54:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"merszym","name":"Merlin Szymanski","path":"/merszym","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/45922464?s=80&v=4"},"commit":{"message":"Fix CI, remove duplicated key in nextflow schema","shortMessageHtmlLink":"Fix CI, remove duplicated key in nextflow schema"}},{"before":"56dfec92ec28e7f5186ed71ca79995e8cc968851","after":"7e41a189f7aa3b7e8d6bedf390402846e05cdec0","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-07-05T08:49:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ilight1542","name":"Ian Light","path":"/ilight1542","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/86308592?s=80&v=4"},"commit":{"message":"small clarity changes for metagenomics backend","shortMessageHtmlLink":"small clarity changes for metagenomics backend"}},{"before":"098d16456260f785a7a9aefd15d0b5d3b20cf3e7","after":"56dfec92ec28e7f5186ed71ca79995e8cc968851","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-07-05T08:28:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ilight1542","name":"Ian Light","path":"/ilight1542","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/86308592?s=80&v=4"},"commit":{"message":"added meta.reference to tool outputs (complexity + kraken2)","shortMessageHtmlLink":"added meta.reference to tool outputs (complexity + kraken2)"}},{"before":"36ae6e216736698592164e1ff740ba9a230fa11c","after":"098d16456260f785a7a9aefd15d0b5d3b20cf3e7","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-06-28T14:39:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"merszym","name":"Merlin Szymanski","path":"/merszym","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/45922464?s=80&v=4"},"commit":{"message":"remove redundant 'single_end = true' statement","shortMessageHtmlLink":"remove redundant 'single_end = true' statement"}},{"before":"735a104e978331ab12e515edde49d5c90ce54ba5","after":"36ae6e216736698592164e1ff740ba9a230fa11c","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-06-28T14:10:22.000Z","pushType":"push","commitsCount":71,"pusher":{"login":"ilight1542","name":"Ian Light","path":"/ilight1542","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/86308592?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into dsl2-metagenomics","shortMessageHtmlLink":"Merge branch 'dev' into dsl2-metagenomics"}},{"before":"2e9bb578669df17d2248c67f5f4a95a8be38e569","after":"735a104e978331ab12e515edde49d5c90ce54ba5","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-06-28T12:42:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ilight1542","name":"Ian Light","path":"/ilight1542","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/86308592?s=80&v=4"},"commit":{"message":"last removal of options: text","shortMessageHtmlLink":"last removal of options: text"}},{"before":"c98d7f877695aed16956495298e6642a4f7b5687","after":"2e9bb578669df17d2248c67f5f4a95a8be38e569","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-06-28T12:39:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ilight1542","name":"Ian Light","path":"/ilight1542","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/86308592?s=80&v=4"},"commit":{"message":"resolved PR comments (formating, redundant info)","shortMessageHtmlLink":"resolved PR comments (formating, redundant info)"}},{"before":"81e45be2f5a18d98b34b437181973c5f8026f41c","after":null,"ref":"refs/heads/patch","pushedAt":"2024-06-28T12:11:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"TCLamnidis","name":"Thiseas C. Lamnidis","path":"/TCLamnidis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22079185?s=80&v=4"}},{"before":"4eb0ffea9d5661ae2c555228c85caa6f800daee9","after":"65055295800d081fb5c5b9ae14267906c7c55b80","ref":"refs/heads/master","pushedAt":"2024-06-28T12:11:42.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"TCLamnidis","name":"Thiseas C. Lamnidis","path":"/TCLamnidis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22079185?s=80&v=4"},"commit":{"message":"Merge pull request #1075 from nf-core/patch\n\nFix issue with MQC not displaying post-ar trimming FastQC results","shortMessageHtmlLink":"Merge pull request #1075 from nf-core/patch"}},{"before":"eb73ae6c006fa3a9ecabe24b79779913fcd94a29","after":"cc114f388184254d31038a8257f7f1870558bb9e","ref":"refs/heads/nf-test-conversion","pushedAt":"2024-06-28T11:40:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jfy133","name":"James A. Fellows Yates","path":"/jfy133","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17950287?s=80&v=4"},"commit":{"message":"Continue customisation","shortMessageHtmlLink":"Continue customisation"}},{"before":"31f590da8db4c285c9f8d0901b96e4eadd5da6c9","after":"c98d7f877695aed16956495298e6642a4f7b5687","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-06-28T11:02:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"merszym","name":"Merlin Szymanski","path":"/merszym","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/45922464?s=80&v=4"},"commit":{"message":"Fix one more bug in bamfilter module","shortMessageHtmlLink":"Fix one more bug in bamfilter module"}},{"before":"714a7a5b90db672e1f2d152a2fef82c14a1be95a","after":"31f590da8db4c285c9f8d0901b96e4eadd5da6c9","ref":"refs/heads/dsl2-metagenomics","pushedAt":"2024-06-28T09:19:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"merszym","name":"Merlin Szymanski","path":"/merszym","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/45922464?s=80&v=4"},"commit":{"message":"Fix copy-paste error in bamfiltering module","shortMessageHtmlLink":"Fix copy-paste error in bamfiltering module"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEigSB9gA","startCursor":null,"endCursor":null}},"title":"Activity · nf-core/eager"}