unity.config

/*
    * -------------------------------------------------
    *  Unity HPC cluster config file for nf-core
    * -------------------------------------------------
    * https://unity.rc.umass.edu/
    */

params {
    config_profile_description = 'Unity HPC cluster profile provided by nf-core/configs.'
    config_profile_contact = 'Berent Aldikacti (@baldikacti)'
    config_profile_url = 'https://unity.rc.umass.edu/'

    igenomes_base = '/datasets/bio/igenomes'

    max_memory = 2.TB
    max_cpus = 192
    max_time = 14.d
}

process {
    resourceLimits = [
        cpus: 192,
        memory: 2.TB,
        time: 14.d
    ]
    executor = 'slurm'

    // Selects partition based on process time
    queue = { task.time <= 2.h ? 'cpu-preempt' : 'cpu' }
    clusterOptions = { "${task.time >= 48.h ? '-q long' : ''}" }

    maxRetries = 2

}

// Limits job submission to 1000 consecutive run and 20 submissions per second
executor {
    queueSize = 1000
    submitRateLimit = '20sec'
    pollInterval = '30sec'
    queueStatInterval = '1min'
}

apptainer {
    enabled = true
    autoMounts = true
    pullTimeout = '120m'
}

// clean the generated files in the working directory
cleanup = true