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Release 2.12.0 #794

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merged 33 commits into from
Nov 15, 2024

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Merged

Release 2.12.0 #794

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GitHub Actions / JUnit Test Report failed Nov 14, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in Custom DADA2 Reference Taxonomy Database

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

Custom DADA2 Reference Taxonomy Database

Assertion failed: 

23 of 25 assertions failed
Raw output
Nextflow stdout:

ERROR ~ Unexpected end of ZLIB input stream

 -- Check script './workflows/ampliseq.nf' at line: 322 or see '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/ee01a448636d56e7fe65cc46a67aa9a6/meta/nextflow.log' file for more details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/ee01a448636d56e7fe65cc46a67aa9a6/meta/nextflow.log' file for details
ERROR ~ Cannot invoke method getAt() on null object

 -- Check script './workflows/../subworkflows/local/dada2_preprocessing.nf' at line: 61 or see '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/ee01a448636d56e7fe65cc46a67aa9a6/meta/nextflow.log' file for more details
Nextflow stderr:

Nextflow 24.10.0 is available - Please consider updating your version to it