diff --git a/modules/local/cutadapt_summary_merge.nf b/modules/local/cutadapt_summary_merge.nf
index 2b25fb42..d3ce8758 100644
--- a/modules/local/cutadapt_summary_merge.nf
+++ b/modules/local/cutadapt_summary_merge.nf
@@ -2,10 +2,10 @@ process CUTADAPT_SUMMARY_MERGE {
     tag "${files}"
     label 'process_low'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     val(action)
diff --git a/modules/local/dada2_addspecies.nf b/modules/local/dada2_addspecies.nf
index 6f528264..8976648f 100644
--- a/modules/local/dada2_addspecies.nf
+++ b/modules/local/dada2_addspecies.nf
@@ -3,10 +3,10 @@ process DADA2_ADDSPECIES {
     label 'process_high'
     label 'single_cpu'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     path(taxtable)
diff --git a/modules/local/dada2_denoising.nf b/modules/local/dada2_denoising.nf
index 2cf7fa1b..637bd898 100644
--- a/modules/local/dada2_denoising.nf
+++ b/modules/local/dada2_denoising.nf
@@ -3,10 +3,10 @@ process DADA2_DENOISING {
     label 'process_medium'
     label 'process_long'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path("filtered/*"), path(errormodel)
diff --git a/modules/local/dada2_err.nf b/modules/local/dada2_err.nf
index 0c9357e9..9f463292 100644
--- a/modules/local/dada2_err.nf
+++ b/modules/local/dada2_err.nf
@@ -2,10 +2,10 @@ process DADA2_ERR {
     tag "$meta.run"
     label 'process_medium'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path(reads)
diff --git a/modules/local/dada2_filtntrim.nf b/modules/local/dada2_filtntrim.nf
index 9aca5912..a2a015c2 100644
--- a/modules/local/dada2_filtntrim.nf
+++ b/modules/local/dada2_filtntrim.nf
@@ -2,10 +2,10 @@ process DADA2_FILTNTRIM {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path(reads), val(trunclenf), val(trunclenr)
diff --git a/modules/local/dada2_quality.nf b/modules/local/dada2_quality.nf
index ff91c995..5401497a 100644
--- a/modules/local/dada2_quality.nf
+++ b/modules/local/dada2_quality.nf
@@ -2,10 +2,10 @@ process DADA2_QUALITY {
     tag "$meta"
     label 'process_low'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path(reads)
diff --git a/modules/local/dada2_rmchimera.nf b/modules/local/dada2_rmchimera.nf
index 4e14ce1c..0ba546b7 100644
--- a/modules/local/dada2_rmchimera.nf
+++ b/modules/local/dada2_rmchimera.nf
@@ -2,10 +2,10 @@ process DADA2_RMCHIMERA {
     tag "$meta.run"
     label 'process_medium'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path(seqtab)
diff --git a/modules/local/dada2_stats.nf b/modules/local/dada2_stats.nf
index f4112046..eb36195b 100644
--- a/modules/local/dada2_stats.nf
+++ b/modules/local/dada2_stats.nf
@@ -2,10 +2,10 @@ process DADA2_STATS {
     tag "$meta.run"
     label 'process_low'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path("filter_and_trim_files/*"), path(denoised), path(mergers), path(seqtab_nochim)
diff --git a/modules/local/dada2_taxonomy.nf b/modules/local/dada2_taxonomy.nf
index 4be292d2..0a2c28f6 100644
--- a/modules/local/dada2_taxonomy.nf
+++ b/modules/local/dada2_taxonomy.nf
@@ -2,10 +2,10 @@ process DADA2_TAXONOMY {
     tag "${fasta},${database}"
     label 'process_high'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     path(fasta)
diff --git a/modules/local/format_pplacetax.nf b/modules/local/format_pplacetax.nf
index 1861a365..92930b19 100644
--- a/modules/local/format_pplacetax.nf
+++ b/modules/local/format_pplacetax.nf
@@ -2,10 +2,10 @@ process FORMAT_PPLACETAX {
     tag "${tax.baseName}"
     label 'process_high'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path(tax)
diff --git a/modules/local/merge_stats.nf b/modules/local/merge_stats.nf
index b2e2cb8c..d9343f5a 100644
--- a/modules/local/merge_stats.nf
+++ b/modules/local/merge_stats.nf
@@ -1,10 +1,10 @@
 process MERGE_STATS {
     label 'process_low'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     path('file1.tsv')
diff --git a/modules/local/metadata_all.nf b/modules/local/metadata_all.nf
index 8993d1ca..770f994c 100644
--- a/modules/local/metadata_all.nf
+++ b/modules/local/metadata_all.nf
@@ -2,10 +2,10 @@ process METADATA_ALL {
     tag "$metadata"
     label 'process_low'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     path(metadata)
diff --git a/modules/local/metadata_pairwise.nf b/modules/local/metadata_pairwise.nf
index 6dd9ab11..a4aa7e06 100644
--- a/modules/local/metadata_pairwise.nf
+++ b/modules/local/metadata_pairwise.nf
@@ -2,10 +2,10 @@ process METADATA_PAIRWISE {
     tag "$metadata"
     label 'process_low'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     path(metadata)
diff --git a/modules/local/novaseq_err.nf b/modules/local/novaseq_err.nf
index 991fa803..30e113fd 100644
--- a/modules/local/novaseq_err.nf
+++ b/modules/local/novaseq_err.nf
@@ -2,10 +2,10 @@ process NOVASEQ_ERR {
     tag "$meta.run"
     label 'process_medium'
 
-    conda "bioconda::bioconductor-dada2=1.28.0"
+    conda "bioconda::bioconductor-dada2=1.30.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.28.0--r43hf17093f_0' :
-        'biocontainers/bioconductor-dada2:1.28.0--r43hf17093f_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.30.0--r43hf17093f_0' :
+        'biocontainers/bioconductor-dada2:1.30.0--r43hf17093f_0' }"
 
     input:
     tuple val(meta), path(errormodel)