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Explore VariantRecalibrator and ApplyVQSR for better filtering #166

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nvnieuwk opened this issue Mar 13, 2024 · 2 comments
Open

Explore VariantRecalibrator and ApplyVQSR for better filtering #166

nvnieuwk opened this issue Mar 13, 2024 · 2 comments
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enhancement New feature or request

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@nvnieuwk
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Description of feature

https://gatk.broadinstitute.org/hc/en-us/articles/360036510892-VariantRecalibrator
https://gatk.broadinstitute.org/hc/en-us/articles/360037056912-ApplyVQSR

=> Also look at Sarek
@nvnieuwk nvnieuwk added the enhancement New feature or request label Mar 13, 2024
@nvnieuwk nvnieuwk added this to the 1.6.0 milestone Mar 13, 2024
@matthdsm
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Noooooo, tooo slooooowww
There's a reason bcbio didn't do it

@nvnieuwk
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I should have made the title a bit clear 😁

@nvnieuwk nvnieuwk changed the title Add VariantRecalibrator and ApplyVQSR for better filtering Explore VariantRecalibrator and ApplyVQSR for better filtering Mar 13, 2024
@nvnieuwk nvnieuwk removed this from the 1.6.0 milestone Apr 11, 2024
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@matthdsm @nvnieuwk