Detect outliers using a heuristic about the temporal smoothness of motion

[niksirbi]

No description provided.

[Lauraschwarz]

This would help a lot with understanding and exploring how well ones model actually works. Being able to explore the data and seeing how many of the nodes jump around a lot (e.g. from mouse1 to mouse2) can help compare the models own internal metrics of performance with its actual performance. Additionally to using velocity of single keypoints the amount of NANs (not detected keypoints) in a given prediction output file could also help. (Keypoint moseq has sth like this implemented here: https://keypoint-moseq.readthedocs.io/en/latest/FAQs.html#high-proportion-of-nans )

[niksirbi]

Thanks @Lauraschwarz , this is helpful!

We plan to use several heuristics as quality-control metrics for the predictions (and to detect outliers):

• temporal smoothness (aka jumping too much from frame to frame)
• pose plausibility (if the entire configuration of the body looks "weird")
• multi-view consistency (if you have more than cameras, do their individual predictions agree with each other?)

We've borrowed these ideas from LightningPose, and they're described here. We haven't implemented these yet, but hopefully we'll start working on them soon.

Regarding the reporting of NaN values, we already have a function for that. I'd encourage you to read the two example below, to see this feature in action.

• Drop outliers and interpolate
• Smooth pose tracks