From f1a9a2efa5629790eace49784b4c828182eda02c Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Fri, 23 Jun 2023 13:52:01 +0200 Subject: [PATCH] [DATALAD] Recorded changes --- ...pace-MNI152NLin6_desc-allLabels_dseg.json} | 0 ...Lin6_desc-allLabels_res-1x1x1_dseg.nii.gz} | Bin ...Lin6_desc-allLabels_res-2x2x2_dseg.nii.gz} | Bin ...Lin6_desc-allLabels_res-4x4x4_dseg.nii.gz} | Bin ...NLin6_res-1x1x1T1w_desc-brain_mask.nii.gz} | Bin ...NLin6_res-2x2x2T1w_desc-brain_mask.nii.gz} | Bin ...NLin6_res-4x4x4T1w_desc-brain_mask.nii.gz} | Bin tests/bids_parse.m~ | 23 ------------------ 8 files changed, 23 deletions(-) rename atlases/label/Human/{atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_dseg.json => atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_dseg.json} (100%) rename atlases/label/Human/{atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-1x1x1_dseg.nii.gz => atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-1x1x1_dseg.nii.gz} (100%) rename atlases/label/Human/{atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-2x2x2_dseg.nii.gz => atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-2x2x2_dseg.nii.gz} (100%) rename atlases/label/Human/{atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-4x4x4_dseg.nii.gz => atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-4x4x4_dseg.nii.gz} (100%) rename atlases/mask/{space-MNI152NLin6_res-1x1x1T1wdesc-brain_mask.nii.gz => space-MNI152NLin6_res-1x1x1T1w_desc-brain_mask.nii.gz} (100%) rename atlases/mask/{space-MNI152NLin6_res-2x2x2T1wdesc-brain_mask.nii.gz => space-MNI152NLin6_res-2x2x2T1w_desc-brain_mask.nii.gz} (100%) rename atlases/mask/{space-MNI152NLin6_res-4x4x4T1wdesc-brain_mask.nii.gz => space-MNI152NLin6_res-4x4x4T1w_desc-brain_mask.nii.gz} (100%) delete mode 100644 tests/bids_parse.m~ diff --git a/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_dseg.json b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_dseg.json similarity index 100% rename from atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_dseg.json rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_dseg.json diff --git a/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-1x1x1_dseg.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-1x1x1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-1x1x1_dseg.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-1x1x1_dseg.nii.gz diff --git a/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-2x2x2_dseg.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-2x2x2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-2x2x2_dseg.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-2x2x2_dseg.nii.gz diff --git a/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-4x4x4_dseg.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-4x4x4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_label_all_res-4x4x4_dseg.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_desc-allLabels_res-4x4x4_dseg.nii.gz diff --git a/atlases/mask/space-MNI152NLin6_res-1x1x1T1wdesc-brain_mask.nii.gz b/atlases/mask/space-MNI152NLin6_res-1x1x1T1w_desc-brain_mask.nii.gz similarity index 100% rename from atlases/mask/space-MNI152NLin6_res-1x1x1T1wdesc-brain_mask.nii.gz rename to atlases/mask/space-MNI152NLin6_res-1x1x1T1w_desc-brain_mask.nii.gz diff --git a/atlases/mask/space-MNI152NLin6_res-2x2x2T1wdesc-brain_mask.nii.gz b/atlases/mask/space-MNI152NLin6_res-2x2x2T1w_desc-brain_mask.nii.gz similarity index 100% rename from atlases/mask/space-MNI152NLin6_res-2x2x2T1wdesc-brain_mask.nii.gz rename to atlases/mask/space-MNI152NLin6_res-2x2x2T1w_desc-brain_mask.nii.gz diff --git a/atlases/mask/space-MNI152NLin6_res-4x4x4T1wdesc-brain_mask.nii.gz b/atlases/mask/space-MNI152NLin6_res-4x4x4T1w_desc-brain_mask.nii.gz similarity index 100% rename from atlases/mask/space-MNI152NLin6_res-4x4x4T1wdesc-brain_mask.nii.gz rename to atlases/mask/space-MNI152NLin6_res-4x4x4T1w_desc-brain_mask.nii.gz diff --git a/tests/bids_parse.m~ b/tests/bids_parse.m~ deleted file mode 100644 index cf14d39..0000000 --- a/tests/bids_parse.m~ +++ /dev/null @@ -1,23 +0,0 @@ -% test script to ensure that all files are BIDS friendly enough to be parsed by BIDS-matlab - -this_dir = fileparts(mfilename('fullpath')); - -label_folder = fullfile(this_dir, '..', 'atlases', 'label', 'Human'); - - - -function test_folder(folder) - files = bids.internal.file_utils('FPList', label_folder, '^*.nii.gz'); - - for i = 1:size(files, 1) - - this_file = deblank(files(i, :)); - - try - bids.File(this_file, 'tolerant', false, 'verbose', true); - catch - fprintf(1, '%s is not BIDS friendly\n', bids.internal.file_utils(this_file, 'filename')); - end - - end -end \ No newline at end of file