Building Hash Table...Killed

[Ekgachai]

Hello

I got this message "Building Hash Table...Killed" when I try to assembly animal mitogenome.

What does it mean?

Running with test dataset was worked well

Thank you very much

[ndierckx]

Hi,

That means you run out of memory, you can use the max memory option, but make sure you don't put in all the memory your machine has, maybe 80% or so. If the assembly didn't work with the max memory option because of not enough data, best to run it on a bigger machine

[cuetoluis]

Same problem, "Building Hash Table...Killed". I do not think it is a memory problem or the power of the machine. I tried several powerful computers with high-quality sequences.

[ndierckx]

Have you tried the max memory option, because it don't know any other cause for this..
Are you running on a local computer or a HPC?

[alexanderyesaya]

Same problem, "Building Hash Table...Killed", although I am using an HPC

[ndierckx]

Have you tried the max memory option? HPC doesn't mean you have unlimited memory, how much did you request and how large is your dataset? I would recommend to always use the max memory option with large datasets because there is no need for massive amount of sequencing depth