DESCRIPTION

Type: package
Package: mskgrailtechval
Version: 0.0-1
Date: 2019-06-29
Title: High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
Authors@R: c(person("David", "Brown", role = "ctb", email = "brownd7@mskcc.org"),
	     person("Earl Hubbel", "Hubbell", role = "ctb", email = "ehubbell@grailbio.com"),
	     person("Byoungsok", "Jung", role = "ctb", email = "bjung@grailbio.com"),
	     person("Qinwen", "Liu", role = "ctb", email = "qliu@grailbio.com"),
	     person("Oliver", "Venn", role = "ctb", email = "ovenn@grailbio.com"))
Author: David Brown <brownd7@mskcc.org>
Description: Provides access to data in Razavi et al. and code base for reproducing results of the manuscript
Maintainer: David Brown <ndbrown6@gmail.com>
URL: https://github.com/ndbrown6/MSK-GRAIL-TECHVAL
Depends: R (>= 3.5.1), GenomicRanges, GenomicAlignments, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens, org.Hs.eg.db, annotate, gdata, foreach, parallel, doMC, RColorBrewer, stringr, ggplot2, tidyverse, readr, reshape2, pander, broom, scales, gridExtra, ggridges, plotrix, deconstructSigs, gplots, fuzzyjoin, cowplot, googlesheets, Publish, Palimpsest, BSgenome.Hsapiens.UCSC.hg19, vioplot, corrplot, awtools, beeswarm, clinfun, data.table, mblm, pscl, boot, snow, colorspace, magrittr, ggrepel, copynumber, eulerr, maftools, GAP, pROC, lmtest, glmperm
License: GPL (>= 2)
biocViews:
LazyLoad: yes