.gitignore

*
!.gitignore
# github root
!*.md
!LISENCE


# Code
!*.hpp
!*.cpp
!*.c
!*.inc
!*.sh

# HTML
!*.cgi
!*.html
!*.js

# Doc
!*.txt
!*.tex
!*.jpg
!*.JPG


# Directories
!dissim/
!dissim/nw/
!dm/
!dm/conversion/
!dm/data/
!dm/doc.draft/
!dm/doc.draft/MDS/
!dm/doc.draft/multivariate_data_analysis/
!dm/doc.draft/probability/
!genetics/
!genetics/data/
!ncbitax/
!phylogeny/
!phylogeny/Trees/
!phylogeny/data/
!phylogeny/data/featureTree/
#!phylogeny/data/inc.ITS/
!phylogeny/database/
!phylogeny/distTree_inc/
!phylogeny/doc/
!phylogeny/doc/Covid/
!phylogeny/doc/featureTree.draft/
!phylogeny/doc/inc_ls_dist_tree/
!phylogeny/doc/ls_dist_tree_notes.draft/
!phylogeny/doc/tax_miscongruence/
!phylogeny/inc/
!phylogeny/inc/dissim_full/
!phylogeny/inc/genome/
!phylogeny/inc/genome/Chlorophyta/
!phylogeny/inc/genome/Fungi/
!phylogeny/inc/genome/Metazoa/
!phylogeny/inc/genome/Metazoa-RefSeq/
!phylogeny/inc/genome/Protists/
!phylogeny/inc/genome/Viridiplantae/
!phylogeny/inc/genome/Viridiplantae-RefSeq/
!phylogeny/inc/genome/bacteria/
!phylogeny/inc/genome/bacteria_type/
!phylogeny/inc/genome/prokaryota/
!phylogeny/inc/rRNA/
!phylogeny/inc/rRNA/5.8S/
!phylogeny/inc/rRNA/Fungi/
!phylogeny/inc/rRNA/Fungi/18SrRNA/
!phylogeny/inc/rRNA/Fungi/28SrRNA/
!phylogeny/inc/rRNA/Fungi/ITS/
!phylogeny/inc/rRNA/SSU/
!phylogeny/inc/rRNA/bacteria/
!phylogeny/inc/virus/
!phylogeny/inc/virus/SARS-CoV-2/
phylogeny/inc_save.sh
!tsv/
!xml/


cpp_test.cpp
fstream_test.cpp
missed_version.sh
dm/circuit.cpp
dm/dnf.cpp
genetics/virus2host.cpp
phylogeny/inc_upgrade-1.6.1.sh
genetics/euk_seq1.sh