From 18be8d6c8da06e457231166288e54c56762ea98e Mon Sep 17 00:00:00 2001 From: Arjun Prasad Date: Tue, 6 Aug 2024 15:59:55 -0400 Subject: [PATCH 1/2] typo in README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 8657223..0e9da5c 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ # StxTyper -StxTyper is used to determine stx type from nucleotide sequence. Stx (shiga-toxin) genes are found in some strains of _Escherichia coli_ and code for powerful toxins that can cause severe illness. StxTyper is software to classify these genes from assembled sequence using a standard algorithm. +StxTyper is used to determine stx type from nucleotide sequence. Stx (Shiga-toxin) genes are found in some strains of _Escherichia coli_ and code for powerful toxins that can cause severe illness. StxTyper is software to classify these genes from assembled sequence using a standard algorithm. # Installation From 99a1df15cd535d96462f52c5a7a7c581e8013eb0 Mon Sep 17 00:00:00 2001 From: Vyacheslav Brover Date: Wed, 7 Aug 2024 11:49:01 -0400 Subject: [PATCH 2/2] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0e9da5c..f7239be 100644 --- a/README.md +++ b/README.md @@ -93,7 +93,7 @@ The output of StxTyper is a tab-delimited file with the following fields, all pe nonsense mutation - __FRAMESHIFT__ where StxTyper detected an indel in the coding sequence that would cause a frame shift in one or more of the subunits - - __AMBIGUOUTS__ StxTyper found an ambiguous base in the query sequence + - __AMBIGUOUS__ StxTyper found an ambiguous base in the query sequence (e.g., N), this could be the result sequencing or assembly error so the user might want to take a closer look at the sequence. - __COMPLETE_NOVEL__ a full-length stx operon that is not typeable using