·
5 commits
to master
since this release
This release, as well as the previous one, is based on PGAP-6.7.
- Incorporation of GeneOntology 2024-06-10
- BUG FIX: restore genus-only functionality: #311, #305, #304, #303
- structural annotation algorithm improvements and bug fixes
- TaxCheck fixes:
- Synchronize code in TaxCheck buildruns with code used in internal processes
- Introduce handling of plasmids in contamination (i.e., prevent promiscuous plasmids from counting as contaminants)
- Introduce lineage match options for MAGs
- REQUEST: #273. PGAP now writes only to the output directory, including transient files.
- DATA FIX: #308. We added an HMM NF046015 to correct the name of the protein
Third Party software versions
- tRNAscan-SE 2.0.12
- hmmer v.3.4
- infernal 1.1.5
- CRISPR v.1.03
- AntiFam v.3.0
- Rfam v.14.4
- GeneMarkS-2 v.1.14_1.25