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magicblast-tools/README.md
@@ -28,7 +28,7 @@ Usage
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### Get intron locations from a SAM/BAM file
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```
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-get-introns --bam <SAM/BAM file> --gff <GFF/GTF/SAM/BAM file with annotation> --introns <output file>
+get-introns.py --bam <SAM/BAM file> --gff <GFF/GTF/SAM/BAM file with annotation> --introns <output file>
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The output is a tab delimited file with intron locations marked as KNOWN or NEW.
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