test_prot.expected

Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
blaTEM-156	contig01	101	961	+	blaTEM-156	class A beta-lactamase TEM-156	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_061158039.1	class A beta-lactamase TEM-156	NF000531.2	TEM family class A beta-lactamase	blaTEM-156
blaPDC-114_blast	contig02	1	1191	+	blaPDC	PDC family class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTP	397	397	100.00	99.75	397	WP_061189306.1	class C beta-lactamase PDC-114	NF000422.6	PDC family class C beta-lactamase	blaPDC
blaOXA-436_partial	contig03	101	802	+	blaOXA	OXA-48 family class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	233	265	87.92	100.00	233	WP_058842180.1	OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-436	NF012161.0	class D beta-lactamase	blaOXA-48_fam
vanG	contig04	101	1147	+	vanG	D-alanine--D-serine ligase VanG	core	AMR	AMR	GLYCOPEPTIDE	VANCOMYCIN	EXACTP	349	349	100.00	100.00	349	WP_063856695.1	D-alanine--D-serine ligase VanG	NF000091.3	D-alanine--D-serine ligase VanG	vanG
aph3pp-Ib_partial_5p_neg	contig09	1	675	-	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	PARTIAL_CONTIG_ENDP	225	267	81.27	100.00	217	WP_001082319.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NF032896.1	APH(3'') family aminoglycoside O-phosphotransferase	aph(3'')-Ib
sul2_partial_3p_neg	contig09	715	1377	-	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	PARTIALP	221	271	81.55	100.00	221	WP_001043265.1	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	sul2
blaTEM-internal_stop	contig11	113	547	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	144	286	50.35	97.22	144	WP_000027057.1	broad-spectrum class A beta-lactamase TEM-1	NA	NA	blaTEM
qacR-curated_blast	contig12	71	637	+	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	188	188	100.00	99.47	188	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA	qacR
emrD3-suppressed-in-vibrio	contig13	1	1137	+	emrD3	multidrug efflux MFS transporter EmrD-3	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTP	379	379	100.00	100.00	379	ABQ18953.1	multidrug efflux MFS transporter EmrD-3	NA	NA	emrD3
pmrB_C84R	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTP	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA	pmrB
nfsA_R15C_K141STOP	contig16	1	423	+	nfsA_R15C	Escherichia nitrofurantoin resistant NfsA	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTP	140	240	58.33	99.29	140	WP_089631889.1	nitroreductase NfsA	NA	NA	nfsA
stxA2a_prot	contig18	279	1238	+	stxA2	Shiga toxin Stx2 subunit A	plus	VIRULENCE	VIRULENCE	STX2	stxA2	EXACTP	319	319	100.00	100.00	319	TJA36680.1	Shiga toxin Stx2 subunit A	NF041702.1	Shiga toxin Stx2 subunit A	stxA2_acd
stxB2a_prot	contig18	1250	1519	+	stxB2	Shiga toxin Stx2a subunit B	plus	VIRULENCE	VIRULENCE	STX2	stxB2a	EXACTP	89	89	100.00	100.00	89	AAM90978.1	Shiga toxin Stx2a subunit B	NF033660.0	Shiga toxin Stx2 subunit B	stxB2a
nimIJ_hmm	contigX	1	501	+	nimIJ	NimIJ family 5-nitroimidazole reductase	core	AMR	AMR	NITROIMIDAZOLE	NITROIMIDAZOLE	HMM	166	165	98.18	76.54	162	WP_005812825.1	NimIJ family 5-nitroimidazole reductase	NF000262.1	NimIJ family 5-nitroimidazole reductase	nimIJ