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Missing MajorPTMs train CSV file #94

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YanjingLiLi opened this issue Jul 1, 2024 · 1 comment
Open

Missing MajorPTMs train CSV file #94

YanjingLiLi opened this issue Jul 1, 2024 · 1 comment

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@YanjingLiLi
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Hi authors, I think the proteinBert benchmark data folder misses the train CSV for phophositePTMs (https://github.com/nadavbra/protein_bert/tree/master/protein_benchmarks). Can you help check this? Thanks.

@ddofer
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ddofer commented Jul 1, 2024

As I recall, it was too large to upload on github. We uploaded it elsewhere (maybe in the paper's supplementary?).
REgardless, you can download the dataset's source from phosphoPTM. I think we just did a random split then .

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