updates in lims not reflected in voyager. #28
Description
A cmoid change that is in the lims has not yet registered in voyager. The two igo ids 08039_CV_1 and 08039_CN_11 both had the sample id s_C_4HX0K5_M001_d and mapped to the following two fastq pairs:
s_C_4HX0K5_M001_d idt /igo/delivery/FASTQ/PITT_0522_AHJV3KBBXY/Project_08039_CV/Sample_P-0027816-T02-WES_IGO_08039_CV_1/P-0027816-T02-WES_IGO_08039_CV_1_S6_R1_001.fastq.gz /igo/delivery/FASTQ/PITT_0522_AHJV3KBBXY/Project_08039_CV/Sample_P-0027816-T02-WES_IGO_08039_CV_1/P-0027816-T02-WES_IGO_08039_CV_1_S6_R2_001.fastq.gz 2
s_C_4HX0K5_M001_d idt /ifs/archive/GCL/hiseq/FASTQ/PITT_0495_BHHYJGBBXY_A1/Project_08039_CN/Sample_P-0027816-T02-WES_IGO_08039_CN_11/P-0027816-T02-WES_IGO_08039_CN_11_S21_R1_001.fastq.gz /ifs/archive/GCL/hiseq/FASTQ/PITT_0495_BHHYJGBBXY_A1/Project_08039_CN/Sample_P-0027816-T02-WES_IGO_08039_CN_11/P-0027816-T02-WES_IGO_08039_CN_11_S21_R2_001.fastq.gz 2
However, the fastq pairs related to 08039_CN_11 change cmo id, and is now known as s_C_UE1MR5_M001_d. this can be seen in the lims. after updating both requests with the following command:
singularity exec beagle_0.0.1.sif beaglecli import-requests --request-ids=08039_CN,08039_CV --redelivery=True
the changes are still not reflected in the voyager database.