diff --git a/Changes.md b/Changes.md
index 2d4671813a..8cb36105a3 100644
--- a/Changes.md
+++ b/Changes.md
@@ -1,3 +1,106 @@
+## 2018-08-XX release
+
+### Summary
+
+ * The upper level has been refactored to provide a more intuitive top down view
+ * Additional equivalence axioms to ONCOTREE
+ * Filter redundant mapping from SKOS relationships, fixes #282
+
+### New classes
+
+ * [pulmonary branch stenosis](http://purl.obolibrary.org/obo/MONDO_0020420y)
+ * [myelofibrosis](http://purl.obolibrary.org/obo/MONDO_0044903)
+ * [metastatic squamous cell carcinoma](http://purl.obolibrary.org/obo/MONDO_0044907)
+ * [bladder urothelial papilloma](http://purl.obolibrary.org/obo/MONDO_0044906)
+ * [metastatic malignant neoplasm in the eye](http://purl.obolibrary.org/obo/MONDO_0044913)
+ * [extrarenal rhabdoid tumor](http://purl.obolibrary.org/obo/MONDO_0044916)
+ * [salivary duct carcinoma](http://purl.obolibrary.org/obo/MONDO_0044915)
+ * [metastatic malignant neoplasm in the spinal cord](http://purl.obolibrary.org/obo/MONDO_0044912)
+ * [T-lymphoblastic lymphoma](http://purl.obolibrary.org/obo/MONDO_0044917)
+ * [malignant renal pelvis neoplasm](http://purl.obolibrary.org/obo/MONDO_0044919)
+ * [paranasal sinus mucoepidermoid carcinoma](http://purl.obolibrary.org/obo/MONDO_0044956)
+ * [oral cavity carcinoma](http://purl.obolibrary.org/obo/MONDO_0044925)
+ * [acute myeloid leukemia with mutated CEBPA](http://purl.obolibrary.org/obo/MONDO_0044924)
+ * [oropharyngeal carcinoma](http://purl.obolibrary.org/obo/MONDO_0044926)
+ * [atypical lymphoproliferative disorder](http://purl.obolibrary.org/obo/MONDO_0044921)
+ * [acute myeloid leukemia with mutated NPM1](http://purl.obolibrary.org/obo/MONDO_0044923)
+ * [rectal carcinoma](http://purl.obolibrary.org/obo/MONDO_0044937)
+ * [benign lipomatous neoplasm](http://purl.obolibrary.org/obo/MONDO_0044983)
+ * [drug pseudoallergy](http://purl.obolibrary.org/obo/MONDO_0044982)
+ * [pseudoallergy](http://purl.obolibrary.org/obo/MONDO_0044981)
+ * [disease of signal transduction](http://purl.obolibrary.org/obo/MONDO_0044980)
+ * [disease of membrane bound organelle](http://purl.obolibrary.org/obo/MONDO_0044969)
+ * [abdominal and pelvic region disorder](http://purl.obolibrary.org/obo/MONDO_0044965)
+ * [oral cavity mucoepidermoid carcinoma](http://purl.obolibrary.org/obo/MONDO_0044964)
+ * [limb disorder](http://purl.obolibrary.org/obo/MONDO_0044967)
+ * [eosinophil disease](http://purl.obolibrary.org/obo/MONDO_0044972)
+ * [disease of macromolecular complex](http://purl.obolibrary.org/obo/MONDO_0044971)
+ * [disease of supramolecular complex](http://purl.obolibrary.org/obo/MONDO_0044974)
+ * [mitochondrial disease](http://purl.obolibrary.org/obo/MONDO_0044970)
+ * [disease by cell type](http://purl.obolibrary.org/obo/MONDO_0044979)
+ * [disease of catalytic activity](http://purl.obolibrary.org/obo/MONDO_0044976)
+ * [disease of transporter activity](http://purl.obolibrary.org/obo/MONDO_0044975)
+ * [disease of cell nucleus](http://purl.obolibrary.org/obo/MONDO_0044978)
+ * [disease of receptor activity](http://purl.obolibrary.org/obo/MONDO_0044977)
+ * [desmoplastic spitz nevus](http://purl.obolibrary.org/obo/MONDO_0044800)
+ * [early onset primary dystonia](http://purl.obolibrary.org/obo/MONDO_0044808)
+ * [inherited dystonia](http://purl.obolibrary.org/obo/MONDO_0044807)
+ * [acquired idiopathic torsion dystonia](http://purl.obolibrary.org/obo/MONDO_0044817)
+ * [familial idiopathic torsion dystonia](http://purl.obolibrary.org/obo/MONDO_0044816)
+ * [idiopathic torsion dystonia](http://purl.obolibrary.org/obo/MONDO_0044811)
+ * [childhood myelodysplastic syndrome](http://purl.obolibrary.org/obo/MONDO_0044873)
+ * [dysautonomia](http://purl.obolibrary.org/obo/MONDO_0044872)
+ * [coronary microvascular disease](http://purl.obolibrary.org/obo/MONDO_0044875)
+ * [refractory cytopenia of childhood](http://purl.obolibrary.org/obo/MONDO_0044874)
+ * [dystonia, focal, task-specific](http://purl.obolibrary.org/obo/MONDO_0044871)
+ * [acquired torsion dystonia](http://purl.obolibrary.org/obo/MONDO_0044870)
+ * [paraneoplastic cerebellar degeneration](http://purl.obolibrary.org/obo/MONDO_0044877)
+ * [drug hypersensitivity syndrome](http://purl.obolibrary.org/obo/MONDO_0044876)
+ * [pancreatic mucinous-cystic neoplasm](http://purl.obolibrary.org/obo/MONDO_0044879)
+ * [adult germ cell tumor](http://purl.obolibrary.org/obo/MONDO_0044878)
+ * [torsion dystonia](http://purl.obolibrary.org/obo/MONDO_0044843)
+ * [tonsillar lymphoma](http://purl.obolibrary.org/obo/MONDO_0044884)
+ * [tonsillar lipoma](http://purl.obolibrary.org/obo/MONDO_0044885)
+ * [cystic tumor of the pancreas](http://purl.obolibrary.org/obo/MONDO_0044880)
+ * [hematopoietic and lymphoid cell neoplasm](http://purl.obolibrary.org/obo/MONDO_0044881)
+ * [central nervous system non-hodgkin lymphoma](http://purl.obolibrary.org/obo/MONDO_0044887)
+ * [high grade B-cell lymphoma](http://purl.obolibrary.org/obo/MONDO_0044889)
+ * [X-linked congenital stationary night blindness](http://purl.obolibrary.org/obo/MONDO_0044749)
+ * [anaplasmosis in cattle](http://purl.obolibrary.org/obo/MONDO_0044748)
+ * [human anaplasmosis](http://purl.obolibrary.org/obo/MONDO_0044747)
+ * [zoonotic bacterial infection](http://purl.obolibrary.org/obo/MONDO_0044746)
+ * [chronic diarrheal disease](http://purl.obolibrary.org/obo/MONDO_0044751)
+ * [lumbar spinal stenosis](http://purl.obolibrary.org/obo/MONDO_0044753)
+ * [lassa virus infectious disease](http://purl.obolibrary.org/obo/MONDO_0044750)
+ * [desmoplastic melanoma](http://purl.obolibrary.org/obo/MONDO_0044785)
+ * [myxoma](http://purl.obolibrary.org/obo/MONDO_0044784)
+ * [nasal cavity and paranasal sinus squamous cell carcinoma](http://purl.obolibrary.org/obo/MONDO_0044787)
+ * [solid pseudopapillary neoplasm of the pancreas](http://purl.obolibrary.org/obo/MONDO_0044786)
+ * [nephrotic syndrome of childhood - steroid sensitive](http://purl.obolibrary.org/obo/MONDO_0044781)
+ * [solid papillary breast carcinoma](http://purl.obolibrary.org/obo/MONDO_0044783)
+ * [esophageal ulcer](http://purl.obolibrary.org/obo/MONDO_0044782)
+ * [digital papillary eccrine carcinoma](http://purl.obolibrary.org/obo/MONDO_0044789)
+ * [perihilar intrahepatic cholangiocarcinoma](http://purl.obolibrary.org/obo/MONDO_0044788)
+ * [obsolete congenital melanocytic nevus](http://purl.obolibrary.org/obo/MONDO_0044790)
+ * [spindle cell nevus](http://purl.obolibrary.org/obo/MONDO_0044796)
+ * [epithelioid cell nevus](http://purl.obolibrary.org/obo/MONDO_0044795)
+ * [desmoplastic nevus](http://purl.obolibrary.org/obo/MONDO_0044797)
+ * [large congenital melanocytic nevus](http://purl.obolibrary.org/obo/MONDO_0044792)
+ * [combined hepatocellular carcinoma and cholangiocarcinoma](http://purl.obolibrary.org/obo/MONDO_0044791)
+ * [benign melanocytic skin nevus](http://purl.obolibrary.org/obo/MONDO_0044794)
+ * [spitz nevus](http://purl.obolibrary.org/obo/MONDO_0044793)
+ * [diarrheal disease secondary to decreased bowel motility](http://purl.obolibrary.org/obo/MONDO_0044763)
+ * [diarrheal disease secondary to increased bowel motility](http://purl.obolibrary.org/obo/MONDO_0044762)
+ * [steroid-resistant nephrotic syndrome](http://purl.obolibrary.org/obo/MONDO_0044765)
+ * [benign choroid plexus neoplasm](http://purl.obolibrary.org/obo/MONDO_0044764)
+ * [childhood adrenal gland pheochromocytoma](http://purl.obolibrary.org/obo/MONDO_0044767)
+ * [obsolete Marfan Syndrome 3](http://purl.obolibrary.org/obo/MONDO_0044766)
+ * [vagus nerve paraganglioma](http://purl.obolibrary.org/obo/MONDO_0044768)
+ * [premature ovarian failure 10](http://purl.obolibrary.org/obo/MONDO_0044776)
+ * [nodular lymphocyte predominant Hodgkin lymphoma](http://purl.obolibrary.org/obo/MONDO_0044778)
+ * [premature ovarian failure 14](http://purl.obolibrary.org/obo/MONDO_0044777)
+
+
## 2018-08-03 Release
This release includes more complete mappings to UMLS/MEDGEN
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
index 9dce31da0d..7dfa5accee 100644
--- a/src/ontology/Makefile
+++ b/src/ontology/Makefile
@@ -54,7 +54,7 @@ all: test all_artefacts
# ----------------------------------------
# Artefacts
# ----------------------------------------
-ONTOLOGY_IMPORTS = uberon cl go pato ro hp mf ncbitaxon chebi envo foodon
+ONTOLOGY_IMPORTS = uberon cl go pato ro hp mf ncbitaxon chebi envo ecto hgnc foodon
IMPORT_ROOTS = $(patsubst %, imports/%_import, $(ONTOLOGY_IMPORTS)) imports/equivalencies
IMPORT_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl $(n).obo $(n).json) imports/axioms.owl
IMPORT_FILES_OWL = $(foreach n,$(IMPORT_ROOTS), $(n).owl) imports/axioms.owl
@@ -113,7 +113,7 @@ osf_upload_direct:
ANN = annotate -V $(BASE)/releases/`date +%Y-%m-%d`/$@.owl
filtered.obo: $(SRC)
- perl -ne 'print unless (m@^xref: (Orphanet|OMIM|DOID|EFO|NCIT|SCTID|MESH|UMLS):@ && !(m@equivalentTo@))' $< | grep -v '^property_value: confidence' | grep -v '^property_value: excluded_subClassOf' | grep -v 'relationship: disease_has_basis_in_dysfunction_of HGNC:' > $@.tmp && mv $@.tmp $@
+ perl -ne 'print unless (m@^xref: (Orphanet|OMIM|DOID|EFO|NCIT|SCTID|MESH|UMLS):@ && !(m@equivalent@i))' $< | grep -v '^property_value: confidence' | grep -v '^property_value: excluded_subClassOf' | egrep -v 'relationship: disease_has_basis_in_dysfunction_of (hgnc|HGNC|NCBIGene):' > $@.tmp && mv $@.tmp $@
#egrep -v 'MONDO:(subClassOf|superClassOf|relatedTo)' $< > $@
skos.ttl: $(SRC)
@@ -255,10 +255,11 @@ imports/%_import.owl: mirror/%.owl imports/%_terms.txt
# we use owltools for making the obo file until: https://github.com/ontodev/robot/issues/64
imports/%_import.obo: imports/%_import.owl
- $(OWLTOOLS) $(USECAT) $< -o -f obo --no-check $@.tmp && mv $@.tmp $@
+ $(OWLTOOLS) $(USECAT) $< -o -f obo --no-check $@.tmp && grep -v ^owl-axioms $@.tmp > $@
-
-imports/%_terms.txt: $(SRC)
+edit-merged.owl: $(SRC)
+ robot merge -c true -i $< -o $@
+imports/%_terms.txt: edit-merged.owl
robot query -f tsv -i $< -s ../sparql/classes.sparql $@.tmp && grep -hi $* $@.tmp imports/$*_terms.txt | perl -npe 's@^\<@@;s@>$$@@' | sort -u > $@
# ----------------------------------------
@@ -300,11 +301,10 @@ NEWAXTEST: mondo-edit.owl new.owl
# these live in the ../sparql directory, and have suffix -violation.sparql
# adding the name here will make the violation check live
-EDIT_CHECKS = subclass-cycle equivalent-classes trailing-whitespace owldef-self-reference xref-syntax nolabels undeclared-synonym-type undeclared-subset same-label
-
-MAIN_OWL_CHECKS = subclass-cycle equivalent-classes trailing-whitespace owldef-self-reference xref-syntax nolabels undeclared-synonym-type undeclared-subset same-label
-
-MAIN_OBO_CHECKS = subclass-cycle equivalent-classes trailing-whitespace owldef-self-reference xref-syntax nolabels undeclared-synonym-type undeclared-subset same-label
+CORE_CHECKS = subclass-cycle equivalent-classes trailing-whitespace owldef-self-reference xref-syntax nolabels undeclared-synonym-type undeclared-subset same-label
+EDIT_CHECKS = $(CORE_CHECKS)
+MAIN_OWL_CHECKS = $(CORE_CHECKS) no-superclass
+MAIN_OBO_CHECKS = $(CORE_CHECKS) no-superclass
QSRC = $(SRC)-noimports.owl
@@ -531,59 +531,23 @@ mirror/ncit-disease.obo: mirror/ncit-disease.owl
mirror/rdo.obo:
wget --no-check-certificate ftp://ftp.rgd.mcw.edu/pub/ontology/disease/RDO.obo -O $@ && touch $@
-mirror/ordo_orphanet.owl.zip:
- wget --no-check-certificate -nd -P mirror http://www.orphadata.org/data/ORDO/ordo_orphanet.owl.zip && touch $@
-
-mirror/ordo_orphanet.owl: mirror/ordo_orphanet.owl.zip
- unzip mirror/ordo_orphanet.owl.zip -d mirror
- touch $@
-
mirror/medgen-disease-extract.owl: mirror/medgen-disease-extract.obo
owltools $< -o $@.tmp && perl -npe $(FIX_URI_EXPR) $@.tmp > $@
mirror/dipper-%.ttl:
- wget --no-check-certificate https://data.monarchinitiative.org/ttl/$*.ttl -O $@
-
+ wget --no-check-certificate https://data.monarchinitiative.org/ttl/$*.ttl -O $@.tmp && perl -npe 's@http://www.genenames.org/cgi-bin/gene_symbol_report\\?hgnc_id=@http://identifiers.org/hgnc/@g' $@.tmp > $@
+mirror/dipper-%.obo: mirror/dipper-%.ttl
+ robot convert -i $< -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@
-# ~~~~~~~~
-# ORDO
-# ~~~~~~~~
+mirror/hgnc.owl: mirror/dipper-hgnc.ttl
+ robot query --format ttl -c ../sparql/construct-hgnc.sparql $@ -i $<
+# robot query construct
+# owltools $< --remove-axioms -t EquivalentClasses -o $@
+# owltools $< --remove-dangling -o $@
+# owltools $< --merge-equivalence-sets -s http://identifiers.org/hgnc/ 20 -o $@
-# STEP 1: DOWNLOAD
-mirror/obo_orphanet_1.owl: mirror/ordo_orphanet.owl
- owltools $< $(EFO2OBO_OPTS) -o $@.tmp && mv $@.tmp $@
-
-# STEP 2: Fix XREFs
-mirror/obo_orphanet_2.owl: mirror/obo_orphanet_1.owl
- perl -npe 's@MeSH:@MESH:@;s@ICD-10:@ICD10:@;' $< > $@.tmp && mv $@.tmp $@
-
-# STEP 2b: Create is-a from part-of
-mirror/obo_orphanet_sc.owl: mirror/obo_orphanet_2.owl
- robot query --format ttl -c ../sparql/construct-subclass-from-part-of.sparql $@ -i $<
-
-# STEP 2c: Create subsets based on subClass to sub-root level
-mirror/obo_orphanet_subsets.owl: mirror/obo_orphanet_2.owl
- robot query --format ttl -c ../sparql/construct-ordo-subsets.sparql $@ -i $<
-
-# STEP 3: merge 2b and 2c in to 2
-mirror/obo_orphanet_3.owl: mirror/obo_orphanet_2.owl mirror/obo_orphanet_sc.owl mirror/obo_orphanet_subsets.owl
- owltools $^ --merge-support-ontologies -o $@
-
-# STEP 3b: make an .obo file
-mirror/obo_orphanet_3.obo: mirror/obo_orphanet_3.owl
- owltools $< -o -f obo $@.tmp && grep -v ^owl-axioms $@.tmp > $@
-
-# STEP 4: Remove part-ofs (see 2b, we have these as subClassOf now)
-mirror/obo_orphanet_4.obo: mirror/obo_orphanet_3.obo
- grep -v '^relationship: BFO:0000050' $< > $@
-
-mirror/obo_orphanet.obo: mirror/obo_orphanet_4.obo
- cp $< $@
-mirror/obo_orphanet.owl: mirror/obo_orphanet.obo
- owltools $< -o $@.tmp && perl -npe 's@http://purl.obolibrary.org/obo/Orphanet_@http://www.orpha.net/ORDO/Orphanet_@g' $@.tmp > $@
-
mirror/omia.ttl:
wget --no-check-certificate http://data.monarchinitiative.org/ttl/omia.ttl -O $@ && touch $@
.PRECIOUS: mirror/omia.ttl
@@ -751,7 +715,24 @@ omim2medgen.obo: mim2gene_medgen
# remember to clear tmp/ dir for fresh start
# mondo_queries requires for prefixes
all_unique.tsv:
- rdfmatch -p MONDO -l -c ../plq/mondo_queries.pro -X tmp -A void.ttl -f tsv -v -i all unique_match > $@
+ rdfmatch -p MONDO -l -c ../plq/mondo_queries.pro -X tmp -A void.ttl -f tsv -v -i all -i skos.ttl unique_match > $@
+
+all_unique_fresh: clean_tmp all_unique.tsv
+clean_tmp:
+ rm tmp/*
+
+# ----------------------------------------
+# Metaclasses
+# ----------------------------------------
+disorder-by-%.tsv: mondo-edit.obo
+ blip-findall -r uberonp -r cell -r go -i $< "class_cdef(C,cdef('MONDO:0000001',[disease_has_location=A])),subclassRT(A,'$(subst _,:,$*)')" -select C-A -no_pred -use_tabs -label > $@.tmp && sort -u $@.tmp > $@
+
+disorder-by-anatomical-region.tsv: disorder-by-UBERON_0000475.tsv
+ cp $< $@
+disorder-by-anatomical-system.tsv: disorder-by-UBERON_0000467.tsv
+ cp $< $@
+disorder-by-cell.tsv: disorder-by-CL_0000000.tsv
+ cp $< $@
# ----------------------------------------
# Anns
diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
index 3d2bfbf0d4..f4059459c7 100644
--- a/src/ontology/catalog-v001.xml
+++ b/src/ontology/catalog-v001.xml
@@ -15,6 +15,8 @@
+
+
diff --git a/src/ontology/imports/chebi_import.obo b/src/ontology/imports/chebi_import.obo
index d8e6b769e0..eedc5b4aec 100644
--- a/src/ontology/imports/chebi_import.obo
+++ b/src/ontology/imports/chebi_import.obo
@@ -177,6 +177,15 @@ synonym: "Karbamat" RELATED []
is_a: CHEBI:37022 ! amino-acid anion
relationship: is_conjugate_base_of CHEBI:28616 ! carbamic acid
+[Term]
+id: CHEBI:15022
+name: electron donor
+def: "A molecular entity that can transfer an electron to another molecular entity." []
+synonym: "donneur d'electron" RELATED []
+synonym: "electron donor" EXACT []
+synonym: "Elektronendonator" RELATED []
+is_a: CHEBI:17891 ! donor
+
[Term]
id: CHEBI:15036
name: retinoate
@@ -287,6 +296,65 @@ relationship: RO:0000087 CHEBI:26348 ! prosthetic group
relationship: RO:0000087 CHEBI:50733 ! nutraceutical
relationship: RO:0000087 CHEBI:77746 ! human metabolite
+[Term]
+id: CHEBI:15377
+name: water
+def: "An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms." []
+synonym: "[OH2]" RELATED []
+synonym: "acqua" RELATED []
+synonym: "agua" RELATED []
+synonym: "aqua" RELATED []
+synonym: "BOUND WATER" RELATED []
+synonym: "dihydridooxygen" RELATED []
+synonym: "dihydrogen oxide" RELATED []
+synonym: "eau" RELATED []
+synonym: "H2O" RELATED []
+synonym: "HOH" RELATED []
+synonym: "hydrogen hydroxide" RELATED []
+synonym: "oxidane" EXACT []
+synonym: "Wasser" RELATED []
+synonym: "WATER" EXACT []
+synonym: "Water" EXACT []
+synonym: "water" EXACT []
+is_a: CHEBI:33693 ! oxygen hydride
+is_a: CHEBI:37176 ! mononuclear parent hydride
+is_a: CHEBI:52625 ! inorganic hydroxy compound
+relationship: is_conjugate_acid_of CHEBI:16234 ! hydroxide
+relationship: is_conjugate_base_of CHEBI:29412 ! oxonium
+relationship: RO:0000087 CHEBI:48360 ! amphiprotic solvent
+relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
+relationship: RO:0000087 CHEBI:75772 ! Saccharomyces cerevisiae metabolite
+relationship: RO:0000087 CHEBI:76413 ! greenhouse gas
+relationship: RO:0000087 CHEBI:76971 ! Escherichia coli metabolite
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+
+[Term]
+id: CHEBI:15379
+name: dioxygen
+synonym: "[OO]" RELATED []
+synonym: "dioxygen" EXACT []
+synonym: "dioxygene" RELATED []
+synonym: "Disauerstoff" RELATED []
+synonym: "E 948" RELATED []
+synonym: "E-948" RELATED []
+synonym: "E948" RELATED []
+synonym: "molecular oxygen" RELATED []
+synonym: "O2" RELATED []
+synonym: "Oxygen" RELATED []
+synonym: "OXYGEN MOLECULE" RELATED []
+is_a: CHEBI:138675 ! gas molecular entity
+is_a: CHEBI:25362 ! elemental molecule
+is_a: CHEBI:33263 ! diatomic oxygen
+relationship: is_conjugate_base_of CHEBI:29793 ! hydridodioxygen(1+)
+relationship: RO:0000087 CHEBI:27027 ! micronutrient
+relationship: RO:0000087 CHEBI:33284 ! nutrient
+relationship: RO:0000087 CHEBI:33893 ! reagent
+relationship: RO:0000087 CHEBI:35472 ! anti-inflammatory drug
+relationship: RO:0000087 CHEBI:63248 ! oxidising agent
+relationship: RO:0000087 CHEBI:75772 ! Saccharomyces cerevisiae metabolite
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+relationship: RO:0000087 CHEBI:77974 ! food packaging gas
+
[Term]
id: CHEBI:15705
name: L-alpha-amino acid
@@ -408,6 +476,21 @@ relationship: RO:0000087 CHEBI:75772 ! Saccharomyces cerevisiae metabolite
relationship: RO:0000087 CHEBI:76971 ! Escherichia coli metabolite
relationship: RO:0000087 CHEBI:77746 ! human metabolite
+[Term]
+id: CHEBI:16042
+name: halide anion
+def: "A monoatomic monoanion resulting from the addition of an electron to any halogen atom." []
+synonym: "a halide anion" RELATED []
+synonym: "Halide" RELATED []
+synonym: "halide anions" RELATED []
+synonym: "halide ions" EXACT []
+synonym: "halide(1-)" RELATED []
+synonym: "halides" RELATED []
+synonym: "halogen anion" RELATED []
+synonym: "HX" RELATED []
+is_a: CHEBI:33429 ! monoatomic monoanion
+is_a: CHEBI:79389 ! monovalent inorganic anion
+
[Term]
id: CHEBI:16134
name: ammonia
@@ -480,6 +563,30 @@ relationship: RO:0000087 CHEBI:76971 ! Escherichia coli metabolite
relationship: RO:0000087 CHEBI:77746 ! human metabolite
relationship: RO:0000087 CHEBI:83056 ! Daphnia magna metabolite
+[Term]
+id: CHEBI:16234
+name: hydroxide
+synonym: "HO-" RELATED []
+synonym: "hydridooxygenate(1-)" EXACT []
+synonym: "hydroxide" EXACT []
+synonym: "HYDROXIDE ION" RELATED []
+synonym: "Hydroxide ion" RELATED []
+synonym: "OH(-)" RELATED []
+synonym: "OH-" RELATED []
+synonym: "oxidanide" EXACT []
+is_a: CHEBI:33693 ! oxygen hydride
+relationship: is_conjugate_base_of CHEBI:15377 ! water
+relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
+
+[Term]
+id: CHEBI:16277
+name: haloacetic acid
+def: "A monocarboxylic acid that is acetic acid in which one of the methyl hydrogens has been replaced by a halogen atom." []
+is_a: CHEBI:25384 ! monocarboxylic acid
+is_a: CHEBI:36684 ! organohalogen compound
+relationship: has_functional_parent CHEBI:15366 ! acetic acid
+relationship: is_conjugate_acid_of CHEBI:85638 ! haloacetate(1-)
+
[Term]
id: CHEBI:16294
name: barbituric acid
@@ -496,6 +603,69 @@ relationship: is_conjugate_acid_of CHEBI:57718 ! barbiturate(2-)
relationship: is_conjugate_acid_of CHEBI:77938 ! barbiturate(1-)
relationship: RO:0000087 CHEBI:35703 ! xenobiotic
+[Term]
+id: CHEBI:16393
+name: sphingosine
+def: "A sphing-4-enine in which the double bond is trans." []
+synonym: "(2S,3R)-(E)-2-amino-1,3-dihydroxy-4-octadecene" RELATED []
+synonym: "(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-ene-1-ol" RELATED []
+synonym: "(2S,3R,4E)-2-amino-4-octadecene-1,3-diol" RELATED []
+synonym: "(2S,3R,4E)-2-aminooctadec-4-ene-1,3-diol" EXACT []
+synonym: "(2S,3R,E)-2-aminooctadec-4-ene-1,3-diol" RELATED []
+synonym: "(4E)-sphing-4-enine" RELATED []
+synonym: "(4E)-sphingenine" RELATED []
+synonym: "(E)-2-amino-4-octadecan-1,3-diol" RELATED []
+synonym: "(E)-D-erythro-4-octadecene-1,3-diol" RELATED []
+synonym: "2-amino-4-octadecene-1,3-diol" RELATED []
+synonym: "C18 sphingosine" RELATED []
+synonym: "D-(+)-erythro-1,3-dihydroxy-2-amino-4-trans-octadecene" RELATED []
+synonym: "D-erythro-sphingosine" RELATED []
+synonym: "Sph" RELATED []
+synonym: "Sphing-4-enine" RELATED []
+synonym: "Sphingenine" RELATED []
+synonym: "Sphingoid" RELATED []
+synonym: "sphingosin" RELATED []
+synonym: "Sphingosine" EXACT []
+synonym: "Sphingosine d18:1" RELATED []
+synonym: "trans-4-sphingenine" RELATED []
+synonym: "trans-D-erythro-2-amino-4-octadecene-1,3-diol" RELATED []
+is_a: CHEBI:26743 ! sphing-4-enine
+relationship: is_conjugate_base_of CHEBI:57756 ! sphingosine(1+)
+relationship: is_enantiomer_of CHEBI:46967 ! L-erythro-sphingosine
+relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+
+[Term]
+id: CHEBI:16526
+name: carbon dioxide
+def: "A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond. A colourless, odourless gas under normal conditions, it is produced during respiration by all animals, fungi and microorganisms that depend directly or indirectly on living or decaying plants for food." []
+synonym: "[CO2]" RELATED []
+synonym: "CARBON DIOXIDE" EXACT []
+synonym: "Carbon dioxide" EXACT []
+synonym: "carbon dioxide" EXACT []
+synonym: "carbonic anhydride" RELATED []
+synonym: "CO2" RELATED []
+synonym: "dioxidocarbon" EXACT []
+synonym: "E 290" RELATED []
+synonym: "E-290" RELATED []
+synonym: "E290" RELATED []
+synonym: "R-744" RELATED []
+is_a: CHEBI:138675 ! gas molecular entity
+is_a: CHEBI:23014 ! carbon oxide
+is_a: CHEBI:64708 ! one-carbon compound
+relationship: RO:0000087 CHEBI:35620 ! vasodilator agent
+relationship: RO:0000087 CHEBI:38867 ! anaesthetic
+relationship: RO:0000087 CHEBI:46787 ! solvent
+relationship: RO:0000087 CHEBI:48706 ! antagonist
+relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
+relationship: RO:0000087 CHEBI:75772 ! Saccharomyces cerevisiae metabolite
+relationship: RO:0000087 CHEBI:76413 ! greenhouse gas
+relationship: RO:0000087 CHEBI:76971 ! Escherichia coli metabolite
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+relationship: RO:0000087 CHEBI:77974 ! food packaging gas
+relationship: RO:0000087 CHEBI:78017 ! food propellant
+relationship: RO:0000087 CHEBI:78433 ! refrigerant
+
[Term]
id: CHEBI:16541
name: protein polypeptide chain
@@ -624,6 +794,52 @@ is_a: CHEBI:83925 ! non-proteinogenic alpha-amino acid
relationship: is_conjugate_acid_of CHEBI:60895 ! D-alpha-amino acid anion
relationship: is_tautomer_of CHEBI:59871 ! D-alpha-amino acid zwitterion
+[Term]
+id: CHEBI:16842
+name: formaldehyde
+def: "An aldehyde resulting from the formal oxidation of methanol." []
+synonym: "Formaldehyd" RELATED []
+synonym: "FORMALDEHYDE" EXACT []
+synonym: "Formaldehyde" EXACT []
+synonym: "formaldehyde" EXACT []
+synonym: "FORMALIN" RELATED []
+synonym: "Formalin" RELATED []
+synonym: "Methanal" RELATED []
+synonym: "Methylene oxide" RELATED []
+synonym: "Oxomethane" RELATED []
+synonym: "Oxomethylene" RELATED []
+is_a: CHEBI:17478 ! aldehyde
+is_a: CHEBI:64708 ! one-carbon compound
+relationship: RO:0000087 CHEBI:48219 ! disinfectant
+relationship: RO:0000087 CHEBI:50903 ! carcinogenic agent
+relationship: RO:0000087 CHEBI:50904 ! allergen
+relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
+relationship: RO:0000087 CHEBI:75772 ! Saccharomyces cerevisiae metabolite
+relationship: RO:0000087 CHEBI:76971 ! Escherichia coli metabolite
+relationship: RO:0000087 CHEBI:77941 ! EC 3.5.1.4 (amidase) inhibitor
+relationship: RO:0000087 CHEBI:78298 ! environmental contaminant
+
+[Term]
+id: CHEBI:16874
+name: psychosine
+def: "A glycosylsphingoid consisting of sphingosine having a beta-D-galactosyl residue attached at the 1-position." []
+synonym: "(2S,3R,4E)-2-amino-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-ene" RELATED []
+synonym: "(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl beta-D-galactopyranoside" EXACT []
+synonym: "1-beta-D-galactosphingosine" RELATED []
+synonym: "1-beta-D-galactosylsphingosine" RELATED []
+synonym: "1-O-beta-D-galactopyranosylsphingosine" RELATED []
+synonym: "1-O-beta-D-galactosylsphingosine" RELATED []
+synonym: "Galactosylsphingosine" RELATED []
+synonym: "O-Galactosylsphingosine" RELATED []
+synonym: "O-galactosylsphingosine" RELATED []
+synonym: "Psychosine" EXACT []
+synonym: "sphingosine galactoside" RELATED []
+is_a: CHEBI:36527 ! glycosylsphingoid
+relationship: has_functional_parent CHEBI:16393 ! sphingosine
+relationship: has_functional_parent CHEBI:26743 ! sphing-4-enine
+relationship: is_conjugate_base_of CHEBI:57934 ! psychosine(1+)
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+
[Term]
id: CHEBI:16914
name: salicylic acid
@@ -1000,6 +1216,31 @@ relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
relationship: RO:0000087 CHEBI:76971 ! Escherichia coli metabolite
relationship: RO:0000087 CHEBI:77746 ! human metabolite
+[Term]
+id: CHEBI:17883
+name: hydrogen chloride
+def: "A mononuclear parent hydride consisting of covalently bonded hydrogen and chlorine atoms." []
+synonym: "[HCl]" RELATED []
+synonym: "chlorane" EXACT []
+synonym: "chloridohydrogen" EXACT []
+synonym: "chlorure d'hydrogene" RELATED []
+synonym: "Chlorwasserstoff" RELATED []
+synonym: "cloruro de hidrogeno" RELATED []
+synonym: "HCl" RELATED []
+synonym: "hydrochloric acid" RELATED []
+synonym: "Hydrochloride" RELATED []
+synonym: "Hydrogen chloride" EXACT []
+synonym: "hydrogen chloride" EXACT []
+synonym: "Hydrogenchlorid" RELATED []
+synonym: "Wasserstoffchlorid" RELATED []
+is_a: CHEBI:138675 ! gas molecular entity
+is_a: CHEBI:18140 ! hydrogen halide
+is_a: CHEBI:23117 ! chlorine molecular entity
+is_a: CHEBI:37176 ! mononuclear parent hydride
+relationship: is_conjugate_acid_of CHEBI:17996 ! chloride
+relationship: is_conjugate_base_of CHEBI:50315 ! chloronium
+relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
+
[Term]
id: CHEBI:17891
name: donor
@@ -1042,6 +1283,41 @@ relationship: RO:0000087 CHEBI:50733 ! nutraceutical
relationship: RO:0000087 CHEBI:64416 ! EC 1.3.1.43 (arogenate dehydrogenase) inhibitor
relationship: RO:0000087 CHEBI:78675 ! fundamental metabolite
+[Term]
+id: CHEBI:17996
+name: chloride
+def: "A halide anion formed when chlorine picks up an electron to form an an anion." []
+synonym: "Chloride" EXACT []
+synonym: "chloride" EXACT []
+synonym: "CHLORIDE ION" RELATED []
+synonym: "Chloride ion" RELATED []
+synonym: "Chloride(1-)" RELATED []
+synonym: "chloride(1-)" EXACT []
+synonym: "Chlorine anion" RELATED []
+synonym: "Cl(-)" RELATED []
+synonym: "Cl-" RELATED []
+is_a: CHEBI:16042 ! halide anion
+is_a: CHEBI:33432 ! monoatomic chlorine
+relationship: is_conjugate_base_of CHEBI:17883 ! hydrogen chloride
+relationship: RO:0000087 CHEBI:76971 ! Escherichia coli metabolite
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+
+[Term]
+id: CHEBI:17997
+name: dinitrogen
+def: "An elemental molecule consisting of two trivalently-bonded nitrogen atoms." []
+synonym: "dinitrogen" EXACT []
+synonym: "molecular nitrogen" RELATED []
+synonym: "N#N" RELATED []
+synonym: "N2" RELATED []
+synonym: "Nitrogen" RELATED []
+is_a: CHEBI:138675 ! gas molecular entity
+is_a: CHEBI:25362 ! elemental molecule
+is_a: CHEBI:33266 ! diatomic nitrogen
+relationship: is_conjugate_base_of CHEBI:30102 ! diazynium
+relationship: RO:0000087 CHEBI:77974 ! food packaging gas
+relationship: RO:0000087 CHEBI:78017 ! food propellant
+
[Term]
id: CHEBI:18049
name: piperidine
@@ -1076,6 +1352,16 @@ synonym: "Lipid" EXACT []
synonym: "lipids" EXACT []
is_a: CHEBI:50860 ! organic molecular entity
+[Term]
+id: CHEBI:18140
+name: hydrogen halide
+synonym: "HX" RELATED []
+synonym: "hydrogen halide" EXACT []
+synonym: "hydrogen halides" EXACT []
+synonym: "hydrogen halides" RELATED []
+is_a: CHEBI:33405 ! hydracid
+relationship: RO:0000087 CHEBI:138103 ! inorganic acid
+
[Term]
id: CHEBI:18186
name: tyrosine
@@ -1215,6 +1501,14 @@ synonym: "alkanoyl group" RELATED []
synonym: "groupe acyle" RELATED []
is_a: CHEBI:33247 ! organic group
+[Term]
+id: CHEBI:22271
+name: aflatoxin
+def: "Any of a group of related and highly toxic secondary metabolites (mycotoxins) whose main structural feature is a fused coumarin-bis(dihydrofuran) ring system and which are produced by strains of the moulds Aspergillus flavus or A. parasiticus, together with further metabolites of these mycotoxins" []
+synonym: "aflatoxins" RELATED []
+is_a: CHEBI:48210 ! cyclopentafurofurochromene
+relationship: RO:0000087 CHEBI:25442 ! mycotoxin
+
[Term]
id: CHEBI:22313
name: alkaline earth metal atom
@@ -1232,6 +1526,21 @@ is_a: CHEBI:33318 ! main group element atom
is_a: CHEBI:33521 ! metal atom
is_a: CHEBI:33559 ! s-block element atom
+[Term]
+id: CHEBI:22314
+name: alkali metal atom
+synonym: "alkali metal" RELATED []
+synonym: "alkali metals" EXACT []
+synonym: "Alkalimetall" RELATED []
+synonym: "Alkalimetalle" RELATED []
+synonym: "metal alcalin" RELATED []
+synonym: "metal alcalino" RELATED []
+synonym: "metales alcalinos" RELATED []
+synonym: "metaux alcalins" RELATED []
+is_a: CHEBI:33318 ! main group element atom
+is_a: CHEBI:33521 ! metal atom
+is_a: CHEBI:33559 ! s-block element atom
+
[Term]
id: CHEBI:22315
name: alkaloid
@@ -1244,6 +1553,32 @@ synonym: "alkaloids" EXACT []
is_a: CHEBI:35352 ! organonitrogen compound
relationship: RO:0000087 CHEBI:25212 ! metabolite
+[Term]
+id: CHEBI:22333
+name: alkylating agent
+def: "Highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. It could be used as an antineoplastic agent, but it might be very toxic, with carcinogenic, mutagenic, teratogenic, and immunosuppressant actions. It could also be used as a component of poison gases." []
+is_a: CHEBI:25435 ! mutagen
+
+[Term]
+id: CHEBI:22478
+name: amino alcohol
+def: "An alcohol containing an amino functional group in addition to the alcohol-defining hydroxy group." []
+synonym: "amino alcohols" RELATED []
+synonym: "aminoalcohol" RELATED []
+synonym: "aminoalcohols" RELATED []
+is_a: CHEBI:30879 ! alcohol
+is_a: CHEBI:50047 ! organic amino compound
+
+[Term]
+id: CHEBI:22501
+name: aminodiol
+def: "An amino alcohol having two hydroxy functional groups." []
+synonym: "amino diol" RELATED []
+synonym: "amino diols" RELATED []
+synonym: "aminodiols" RELATED []
+is_a: CHEBI:22478 ! amino alcohol
+is_a: CHEBI:23824 ! diol
+
[Term]
id: CHEBI:22562
name: anilines
@@ -1328,6 +1663,25 @@ id: CHEBI:22881
name: biopterins
is_a: CHEBI:26375 ! pterins
+[Term]
+id: CHEBI:22977
+name: cadmium atom
+synonym: "48Cd" RELATED []
+synonym: "cadmio" RELATED []
+synonym: "cadmium" EXACT []
+synonym: "cadmium" RELATED []
+synonym: "Cd" RELATED []
+synonym: "Kadmium" RELATED []
+is_a: CHEBI:33340 ! zinc group element atom
+
+[Term]
+id: CHEBI:22978
+name: cadmium molecular entity
+synonym: "cadmium compounds" RELATED []
+synonym: "cadmium molecular entities" RELATED []
+is_a: CHEBI:33673 ! zinc group molecular entity
+relationship: BFO:0000051 CHEBI:22977 ! cadmium atom
+
[Term]
id: CHEBI:23004
name: carbamoyl group
@@ -1387,6 +1741,15 @@ synonym: "carbonyl" EXACT []
synonym: "carbonyl group" EXACT []
is_a: CHEBI:51422 ! organodiyl group
+[Term]
+id: CHEBI:23114
+name: chloride salt
+synonym: "chloride salts" RELATED []
+synonym: "chlorides" RELATED []
+is_a: CHEBI:23117 ! chlorine molecular entity
+is_a: CHEBI:33958 ! halide salt
+relationship: BFO:0000051 CHEBI:17996 ! chloride
+
[Term]
id: CHEBI:23116
name: chlorine atom
@@ -1408,6 +1771,21 @@ def: "A halogen molecular entity containing one or more atoms of chlorine." []
is_a: CHEBI:24471 ! halogen molecular entity
relationship: BFO:0000051 CHEBI:23116 ! chlorine atom
+[Term]
+id: CHEBI:23123
+name: chloroacetate
+def: "A haloacetate(1-) resulting from the deprotonation of the carboxy group of chloroacetic acid." []
+synonym: "chloroacetate" EXACT []
+synonym: "chloroacetate anion" RELATED []
+synonym: "chloroacetate(1-)" RELATED []
+synonym: "Chloroacetic acid ion(1-)" RELATED []
+synonym: "mono-chloroacetate" RELATED []
+synonym: "monochloroacetate anion" RELATED []
+synonym: "monochloroacetic acid anion" RELATED []
+is_a: CHEBI:85638 ! haloacetate(1-)
+relationship: has_functional_parent CHEBI:30089 ! acetate
+relationship: is_conjugate_base_of CHEBI:27869 ! chloroacetic acid
+
[Term]
id: CHEBI:23132
name: chlorobenzenes
@@ -1519,6 +1897,20 @@ synonym: "drugs" RELATED []
synonym: "medicine" RELATED []
is_a: CHEBI:52217 ! pharmaceutical
+[Term]
+id: CHEBI:23905
+name: monoatomic anion
+synonym: "monoatomic anions" RELATED []
+is_a: CHEBI:22563 ! anion
+is_a: CHEBI:24867 ! monoatomic ion
+
+[Term]
+id: CHEBI:23906
+name: monoatomic cation
+synonym: "monoatomic cations" RELATED []
+is_a: CHEBI:24867 ! monoatomic ion
+is_a: CHEBI:36916 ! cation
+
[Term]
id: CHEBI:23924
name: enzyme inhibitor
@@ -1564,6 +1956,14 @@ synonym: "O-glycoside" RELATED []
synonym: "O-glycosides" RELATED []
is_a: CHEBI:63161 ! glycosyl compound
+[Term]
+id: CHEBI:24402
+name: glycosphingolipid
+def: "A glycosphingolipid is a glycolipid that is a carbohydrate-containing derivative of a sphingoid or ceramide. It is understood that the carbohydrate residue is attached by a glycosidic linkage to O-1 of the sphingoid." []
+synonym: "glycosphingolipids" RELATED []
+is_a: CHEBI:26739 ! sphingolipid
+is_a: CHEBI:33563 ! glycolipid
+
[Term]
id: CHEBI:24431
name: chemical entity
@@ -1753,6 +2153,39 @@ synonym: "inorganic oxides" RELATED []
is_a: CHEBI:24835 ! inorganic molecular entity
is_a: CHEBI:25741 ! oxide
+[Term]
+id: CHEBI:24839
+name: inorganic salt
+synonym: "anorganisches Salz" RELATED []
+synonym: "inorganic salts" RELATED []
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:24866 ! salt
+
+[Term]
+id: CHEBI:24866
+name: salt
+def: "A salt is an assembly of cations and anions." []
+synonym: "ionic compound" RELATED []
+synonym: "ionic compounds" RELATED []
+synonym: "sal" RELATED []
+synonym: "sales" RELATED []
+synonym: "salt" EXACT []
+synonym: "salts" RELATED []
+synonym: "Salz" RELATED []
+synonym: "Salze" RELATED []
+synonym: "sel" RELATED []
+synonym: "sels" RELATED []
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+relationship: BFO:0000051 CHEBI:22563 ! anion
+relationship: BFO:0000051 CHEBI:36916 ! cation
+
+[Term]
+id: CHEBI:24867
+name: monoatomic ion
+synonym: "monoatomic ions" RELATED []
+is_a: CHEBI:24870 ! ion
+is_a: CHEBI:33238 ! monoatomic entity
+
[Term]
id: CHEBI:24870
name: ion
@@ -1854,6 +2287,14 @@ synonym: "primary metabolites" RELATED []
synonym: "secondary metabolites" RELATED []
is_a: CHEBI:52206 ! biochemical role
+[Term]
+id: CHEBI:25213
+name: metal cation
+synonym: "a metal cation" RELATED []
+synonym: "metal cations" RELATED []
+is_a: CHEBI:23906 ! monoatomic cation
+is_a: CHEBI:36915 ! inorganic cation
+
[Term]
id: CHEBI:25216
name: metalloporphyrin
@@ -1886,6 +2327,15 @@ synonym: "mitochondrial electron-transport chain inhibitor" RELATED []
synonym: "mitochondrial respiratory chain inhibitors" RELATED []
is_a: CHEBI:38497 ! respiratory-chain inhibitor
+[Term]
+id: CHEBI:25362
+name: elemental molecule
+def: "A molecule all atoms of which have the same atomic number." []
+synonym: "homoatomic molecule" RELATED []
+synonym: "homoatomic molecules" RELATED []
+is_a: CHEBI:25367 ! molecule
+is_a: CHEBI:33259 ! elemental molecular entity
+
[Term]
id: CHEBI:25367
name: molecule
@@ -1920,6 +2370,35 @@ def: "Any hydroxybenzoic acid having a single phenolic hydroxy substituent on th
synonym: "monohydroxybenzoic acids" RELATED []
is_a: CHEBI:24676 ! hydroxybenzoic acid
+[Term]
+id: CHEBI:25414
+name: monoatomic monocation
+synonym: "monoatomic monocations" RELATED []
+synonym: "monovalent cation" RELATED []
+synonym: "monovalent inorganic cations" RELATED []
+is_a: CHEBI:23906 ! monoatomic cation
+
+[Term]
+id: CHEBI:25435
+name: mutagen
+def: "An agent that increases the frequency of mutations above the normal background level, usually by interacting directly with DNA and causing it damage, including base substitution." []
+synonym: "mutagene" RELATED []
+synonym: "mutagenes" RELATED []
+synonym: "mutagenic agent" RELATED []
+synonym: "mutageno" RELATED []
+synonym: "mutagenos" RELATED []
+synonym: "mutagens" RELATED []
+is_a: CHEBI:50902 ! genotoxin
+
+[Term]
+id: CHEBI:25442
+name: mycotoxin
+def: "Poisonous substance produced by fungi." []
+synonym: "fungal toxins" RELATED []
+synonym: "mycotoxins" RELATED []
+is_a: CHEBI:27026 ! toxin
+is_a: CHEBI:76946 ! fungal metabolite
+
[Term]
id: CHEBI:25512
name: neurotransmitter
@@ -1927,6 +2406,13 @@ def: "An endogenous compound that is used to transmit information across the syn
synonym: "neurotransmitters" RELATED []
is_a: CHEBI:33280 ! molecular messenger
+[Term]
+id: CHEBI:25513
+name: neutral glycosphingolipid
+def: "Any glycosphingolipid containing unsubstituted glycosyl moieties." []
+synonym: "neutral glycosphingolipids" RELATED []
+is_a: CHEBI:24402 ! glycosphingolipid
+
[Term]
id: CHEBI:25555
name: nitrogen atom
@@ -2263,6 +2749,84 @@ synonym: "short-chain fatty acids" RELATED []
is_a: CHEBI:35366 ! fatty acid
relationship: is_conjugate_acid_of CHEBI:58951 ! short-chain fatty acid anion
+[Term]
+id: CHEBI:26708
+name: sodium atom
+synonym: "11Na" RELATED []
+synonym: "Na" RELATED []
+synonym: "Natrium" RELATED []
+synonym: "natrium" RELATED []
+synonym: "sodio" RELATED []
+synonym: "sodium" EXACT []
+synonym: "sodium" RELATED []
+is_a: CHEBI:22314 ! alkali metal atom
+relationship: RO:0000087 CHEBI:75772 ! Saccharomyces cerevisiae metabolite
+
+[Term]
+id: CHEBI:26710
+name: sodium chloride
+def: "An inorganic chloride salt having sodium(1+) as the counterion." []
+synonym: "chlorure de sodium" RELATED []
+synonym: "cloruro sodico" RELATED []
+synonym: "common salt" RELATED []
+synonym: "halite" RELATED []
+synonym: "Kochsalz" RELATED []
+synonym: "NaCl" RELATED []
+synonym: "natrii chloridum" RELATED []
+synonym: "Natriumchlorid" RELATED []
+synonym: "rock salt" RELATED []
+synonym: "salt" RELATED []
+synonym: "sodium chloride" EXACT []
+synonym: "table salt" RELATED []
+is_a: CHEBI:36093 ! inorganic chloride
+is_a: CHEBI:38702 ! inorganic sodium salt
+
+[Term]
+id: CHEBI:26712
+name: sodium molecular entity
+synonym: "sodium compounds" RELATED []
+synonym: "sodium molecular entities" RELATED []
+is_a: CHEBI:33296 ! alkali metal molecular entity
+relationship: BFO:0000051 CHEBI:26708 ! sodium atom
+
+[Term]
+id: CHEBI:26714
+name: sodium salt
+def: "Any alkali metal salt having sodium(1+) as the cation." []
+synonym: "Natriumsalz" RELATED []
+synonym: "Natriumsalze" RELATED []
+synonym: "sodium salts" RELATED []
+is_a: CHEBI:26712 ! sodium molecular entity
+is_a: CHEBI:35479 ! alkali metal salt
+relationship: BFO:0000051 CHEBI:29101 ! sodium(1+)
+
+[Term]
+id: CHEBI:26738
+name: sphingenine
+def: "A 2-aminooctadecene-1,3-diol having (2S,3R)-configuration." []
+synonym: "sphingenines" RELATED []
+is_a: CHEBI:46963 ! 2-aminooctadecene-1,3-diol
+
+[Term]
+id: CHEBI:26739
+name: sphingolipid
+def: "Sphingolipids are a complex family of compounds that share a common structural feature, a sphingoid base backbone." []
+synonym: "sphingolipids" RELATED []
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:26743
+name: sphing-4-enine
+def: "A sphingenine in which the C=C double bond is located at the 4-position." []
+synonym: "(2S,3R)-2-aminooctadec-4-ene-1,3-diol" EXACT []
+synonym: "4-sphingenine" RELATED []
+synonym: "sphing-4-enine" EXACT []
+is_a: CHEBI:26738 ! sphingenine
+is_a: CHEBI:46964 ! 2-aminooctadec-4-ene-1,3-diol
+relationship: is_enantiomer_of CHEBI:46965 ! (2R,3S)-2-aminooctadec-4-ene-1,3-diol
+
[Term]
id: CHEBI:26764
name: steroid hormone
@@ -2555,6 +3119,32 @@ relationship: RO:0000087 CHEBI:23018 ! EC 4.2.1.1 (carbonic anhydrase) inhibitor
relationship: RO:0000087 CHEBI:35498 ! diuretic
relationship: RO:0000087 CHEBI:35623 ! anticonvulsant
+[Term]
+id: CHEBI:27869
+name: chloroacetic acid
+def: "A chlorocarboxylic acid that is acetic acid carrying a 2-chloro substituent." []
+synonym: "2-chloro-acetic acid" RELATED []
+synonym: "2-chloro-ethanoic acid" RELATED []
+synonym: "2-chloroacetic acid" RELATED []
+synonym: "Acide chloracetique" RELATED []
+synonym: "Acide chloroacetique" RELATED []
+synonym: "Acide monochloracetique" RELATED []
+synonym: "alpha-chloro-acetic acid" RELATED []
+synonym: "CAA" RELATED []
+synonym: "chloracetic acid" RELATED []
+synonym: "Chloroacetic acid" EXACT []
+synonym: "chloroacetic acid" EXACT []
+synonym: "Chloroethanoic acid" RELATED []
+synonym: "Monochloressigsaeure" RELATED []
+synonym: "monochloroacetic acid" RELATED []
+synonym: "monochloroethanoic acid" RELATED []
+is_a: CHEBI:16277 ! haloacetic acid
+is_a: CHEBI:36685 ! chlorocarboxylic acid
+relationship: has_functional_parent CHEBI:15366 ! acetic acid
+relationship: is_conjugate_acid_of CHEBI:23123 ! chloroacetate
+relationship: RO:0000087 CHEBI:22333 ! alkylating agent
+relationship: RO:0000087 CHEBI:24527 ! herbicide
+
[Term]
id: CHEBI:27933
name: beta-lactam antibiotic
@@ -2783,6 +3373,23 @@ is_a: CHEBI:25696 ! organic anion
is_a: CHEBI:35406 ! oxoanion
relationship: is_conjugate_base_of CHEBI:33575 ! carboxylic acid
+[Term]
+id: CHEBI:29101
+name: sodium(1+)
+def: "A monoatomic monocation obtained from sodium." []
+synonym: "Na(+)" RELATED []
+synonym: "Na+" RELATED []
+synonym: "sodium cation" EXACT []
+synonym: "SODIUM ION" RELATED []
+synonym: "sodium(1+)" EXACT []
+synonym: "sodium(1+) ion" EXACT []
+synonym: "sodium(I) cation" EXACT []
+is_a: CHEBI:25414 ! monoatomic monocation
+is_a: CHEBI:33504 ! alkali metal cation
+is_a: CHEBI:37246 ! elemental sodium
+is_a: CHEBI:60242 ! monovalent inorganic cation
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+
[Term]
id: CHEBI:29195
name: cyanate
@@ -2865,6 +3472,21 @@ def: "A carboxamide derived from a monocarboxylic acid." []
synonym: "monocarboxylic acid amides" RELATED []
is_a: CHEBI:37622 ! carboxamide
+[Term]
+id: CHEBI:29412
+name: oxonium
+synonym: "[OH3](+)" RELATED []
+synonym: "aquahydrogen(1+)" EXACT []
+synonym: "H3O(+)" RELATED []
+synonym: "Hydronium cation" RELATED []
+synonym: "Hydronium ion" RELATED []
+synonym: "oxidanium" EXACT []
+synonym: "oxonium" EXACT []
+synonym: "trihydridooxygen(1+)" EXACT []
+is_a: CHEBI:33693 ! oxygen hydride
+is_a: CHEBI:50313 ! onium cation
+relationship: is_conjugate_acid_of CHEBI:15377 ! water
+
[Term]
id: CHEBI:29745
name: barbiturate
@@ -2874,6 +3496,17 @@ synonym: "barbiturate anion" RELATED []
is_a: CHEBI:22691 ! barbiturate anion
relationship: is_conjugate_base_of CHEBI:16294 ! barbituric acid
+[Term]
+id: CHEBI:29793
+name: hydridodioxygen(1+)
+synonym: "[HO2](+)" RELATED []
+synonym: "dioxidenium" EXACT []
+synonym: "HO2(+)" RELATED []
+synonym: "HOO(+)" RELATED []
+synonym: "hydridodioxygen(1+)" EXACT []
+is_a: CHEBI:33693 ! oxygen hydride
+relationship: is_conjugate_acid_of CHEBI:15379 ! dioxygen
+
[Term]
id: CHEBI:30089
name: acetate
@@ -2891,6 +3524,37 @@ relationship: is_conjugate_base_of CHEBI:15366 ! acetic acid
relationship: RO:0000087 CHEBI:75772 ! Saccharomyces cerevisiae metabolite
relationship: RO:0000087 CHEBI:77746 ! human metabolite
+[Term]
+id: CHEBI:30099
+name: diazynediium
+synonym: "[HNNH](2+)" RELATED []
+synonym: "diazynediium" EXACT []
+synonym: "HNNH(2+)" RELATED []
+is_a: CHEBI:35106 ! nitrogen hydride
+relationship: is_conjugate_acid_of CHEBI:30102 ! diazynium
+
+[Term]
+id: CHEBI:30102
+name: diazynium
+synonym: "diazynium" EXACT []
+synonym: "HN2+" RELATED []
+synonym: "N#NH(+)" RELATED []
+is_a: CHEBI:35106 ! nitrogen hydride
+relationship: is_conjugate_acid_of CHEBI:17997 ! dinitrogen
+relationship: is_conjugate_base_of CHEBI:30099 ! diazynediium
+
+[Term]
+id: CHEBI:30217
+name: helium atom
+synonym: "2He" RELATED []
+synonym: "He" RELATED []
+synonym: "helio" RELATED []
+synonym: "Helium" RELATED []
+synonym: "helium" EXACT []
+synonym: "helium" RELATED []
+is_a: CHEBI:33309 ! noble gas atom
+is_a: CHEBI:33559 ! s-block element atom
+
[Term]
id: CHEBI:30411
name: cobalamin
@@ -3360,6 +4024,14 @@ synonym: "elementary particle" EXACT []
synonym: "elementary particles" RELATED []
is_a: CHEBI:36342 ! subatomic particle
+[Term]
+id: CHEBI:33238
+name: monoatomic entity
+def: "A monoatomic entity is a molecular entity consisting of a single atom." []
+synonym: "atomic entity" RELATED []
+synonym: "monoatomic entities" RELATED []
+is_a: CHEBI:33259 ! elemental molecular entity
+
[Term]
id: CHEBI:33240
name: coordination entity
@@ -3468,6 +4140,15 @@ synonym: "primary amide" EXACT []
synonym: "primary amides" EXACT []
is_a: CHEBI:32988 ! amide
+[Term]
+id: CHEBI:33259
+name: elemental molecular entity
+def: "A molecular entity all atoms of which have the same atomic number." []
+synonym: "homoatomic entity" RELATED []
+synonym: "homoatomic molecular entities" RELATED []
+synonym: "homoatomic molecular entity" RELATED []
+is_a: CHEBI:23367 ! molecular entity
+
[Term]
id: CHEBI:33261
name: organosulfur compound
@@ -3477,6 +4158,29 @@ synonym: "organosulfur compounds" RELATED []
is_a: CHEBI:26835 ! sulfur molecular entity
is_a: CHEBI:36962 ! organochalcogen compound
+[Term]
+id: CHEBI:33262
+name: elemental oxygen
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:33259 ! elemental molecular entity
+
+[Term]
+id: CHEBI:33263
+name: diatomic oxygen
+is_a: CHEBI:33262 ! elemental oxygen
+
+[Term]
+id: CHEBI:33266
+name: diatomic nitrogen
+is_a: CHEBI:33267 ! elemental nitrogen
+
+[Term]
+id: CHEBI:33267
+name: elemental nitrogen
+is_a: CHEBI:33465 ! elemental pnictogen
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
[Term]
id: CHEBI:33273
name: polyatomic anion
@@ -3550,6 +4254,16 @@ synonym: "fertiliser" RELATED []
synonym: "fertilizers" RELATED []
is_a: CHEBI:33286 ! agrochemical
+[Term]
+id: CHEBI:33290
+name: food
+def: "Any material that can be ingested by an organism." []
+synonym: "foods" RELATED []
+synonym: "foodstuff" RELATED []
+synonym: "foodstuffs" RELATED []
+is_a: CHEBI:52211 ! physiological role
+relationship: BFO:0000051 CHEBI:78295 ! food component
+
[Term]
id: CHEBI:33292
name: fuel
@@ -3563,6 +4277,14 @@ def: "A substance administered to aid diagnosis of a disease." []
synonym: "diagnostic aid" RELATED []
is_a: CHEBI:52217 ! pharmaceutical
+[Term]
+id: CHEBI:33296
+name: alkali metal molecular entity
+def: "A molecular entity containing one or more atoms of an alkali metal." []
+synonym: "alkali metal molecular entities" RELATED []
+is_a: CHEBI:33674 ! s-block molecular entity
+relationship: BFO:0000051 CHEBI:22314 ! alkali metal atom
+
[Term]
id: CHEBI:33299
name: alkaline earth molecular entity
@@ -3647,6 +4369,26 @@ synonym: "carboxylic esters" EXACT []
is_a: CHEBI:35701 ! ester
is_a: CHEBI:36586 ! carbonyl compound
+[Term]
+id: CHEBI:33309
+name: noble gas atom
+synonym: "Edelgas" RELATED []
+synonym: "Edelgase" RELATED []
+synonym: "gas noble" RELATED []
+synonym: "gases nobles" RELATED []
+synonym: "gaz noble" RELATED []
+synonym: "gaz nobles" RELATED []
+synonym: "group 18 elements" RELATED []
+synonym: "group VIII elements" RELATED []
+synonym: "inert gases" RELATED []
+synonym: "noble gas" EXACT []
+synonym: "noble gas" RELATED []
+synonym: "noble gases" EXACT []
+synonym: "rare gases" RELATED []
+is_a: CHEBI:138675 ! gas molecular entity
+is_a: CHEBI:25585 ! nonmetal atom
+is_a: CHEBI:33318 ! main group element atom
+
[Term]
id: CHEBI:33318
name: main group element atom
@@ -3734,6 +4476,39 @@ synonym: "sulfur oxoacid derivatives" RELATED []
is_a: CHEBI:26835 ! sulfur molecular entity
is_a: CHEBI:33241 ! oxoacid derivative
+[Term]
+id: CHEBI:33429
+name: monoatomic monoanion
+synonym: "monoatomic monoanions" RELATED []
+is_a: CHEBI:23905 ! monoatomic anion
+is_a: CHEBI:36830 ! monoanion
+
+[Term]
+id: CHEBI:33431
+name: elemental chlorine
+is_a: CHEBI:23117 ! chlorine molecular entity
+is_a: CHEBI:33434 ! elemental halogen
+
+[Term]
+id: CHEBI:33432
+name: monoatomic chlorine
+synonym: "atomic chlorine" RELATED []
+is_a: CHEBI:33431 ! elemental chlorine
+is_a: CHEBI:33433 ! monoatomic halogen
+
+[Term]
+id: CHEBI:33433
+name: monoatomic halogen
+synonym: "monoatomic halogens" RELATED []
+is_a: CHEBI:33238 ! monoatomic entity
+
+[Term]
+id: CHEBI:33434
+name: elemental halogen
+synonym: "elemental halogen" EXACT []
+synonym: "elemental halogens" RELATED []
+is_a: CHEBI:33259 ! elemental molecular entity
+
[Term]
id: CHEBI:33452
name: benzylic group
@@ -3773,6 +4548,15 @@ is_a: CHEBI:24834 ! inorganic anion
is_a: CHEBI:26082 ! phosphorus molecular entity
is_a: CHEBI:33459 ! pnictogen oxoanion
+[Term]
+id: CHEBI:33465
+name: elemental pnictogen
+synonym: "elemental pnictogen" EXACT []
+synonym: "elemental pnictogens" RELATED []
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:33259 ! elemental molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+
[Term]
id: CHEBI:33482
name: sulfur oxoanion
@@ -3808,6 +4592,12 @@ synonym: "transition metal molecular entity" RELATED []
is_a: CHEBI:23367 ! molecular entity
relationship: BFO:0000051 CHEBI:27081 ! transition element atom
+[Term]
+id: CHEBI:33504
+name: alkali metal cation
+synonym: "alkali metal cations" RELATED []
+is_a: CHEBI:25213 ! metal cation
+
[Term]
id: CHEBI:33521
name: metal atom
@@ -3872,6 +4662,14 @@ synonym: "d-block elements" RELATED []
is_a: CHEBI:27081 ! transition element atom
is_a: CHEBI:33521 ! metal atom
+[Term]
+id: CHEBI:33563
+name: glycolipid
+def: "Any member of class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar part acylated by one or more fatty acids and the glycerol part may be absent." []
+synonym: "Glycolipid" EXACT []
+synonym: "glycolipids" EXACT []
+is_a: CHEBI:35740 ! liposaccharide
+
[Term]
id: CHEBI:33575
name: carboxylic acid
@@ -3909,6 +4707,16 @@ synonym: "carbon group molecular entity" EXACT []
is_a: CHEBI:33675 ! p-block molecular entity
relationship: BFO:0000051 CHEBI:33306 ! carbon group element atom
+[Term]
+id: CHEBI:33583
+name: noble gas molecular entity
+def: "A main group molecular entity containing one or more atoms of any noble gas." []
+synonym: "noble gas compounds" RELATED []
+synonym: "noble gas molecular entities" RELATED []
+synonym: "noble gas molecular entity" EXACT []
+is_a: CHEBI:33579 ! main group molecular entity
+relationship: BFO:0000051 CHEBI:33309 ! noble gas atom
+
[Term]
id: CHEBI:33595
name: cyclic compound
@@ -4089,6 +4897,16 @@ synonym: "d-block molecular entity" EXACT []
is_a: CHEBI:33497 ! transition element molecular entity
relationship: BFO:0000051 CHEBI:33561 ! d-block element atom
+[Term]
+id: CHEBI:33679
+name: helium molecular entity
+synonym: "helium compounds" RELATED []
+synonym: "helium molecular entities" RELATED []
+synonym: "helium molecular entity" EXACT []
+is_a: CHEBI:33583 ! noble gas molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+relationship: BFO:0000051 CHEBI:30217 ! helium atom
+
[Term]
id: CHEBI:33692
name: hydrides
@@ -4096,6 +4914,14 @@ def: "Hydrides are chemical compounds of hydrogen with other chemical elements."
is_a: CHEBI:33608 ! hydrogen molecular entity
is_a: CHEBI:37577 ! heteroatomic molecular entity
+[Term]
+id: CHEBI:33693
+name: oxygen hydride
+synonym: "hydrides of oxygen" RELATED []
+synonym: "oxygen hydride" EXACT []
+synonym: "oxygen hydrides" RELATED []
+is_a: CHEBI:36902 ! chalcogen hydride
+
[Term]
id: CHEBI:33694
name: biomacromolecule
@@ -4443,6 +5269,15 @@ name: macronutrient
synonym: "macronutrients" RELATED []
is_a: CHEBI:33284 ! nutrient
+[Term]
+id: CHEBI:33958
+name: halide salt
+synonym: "halide salts" RELATED []
+synonym: "halides" RELATED []
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:37578 ! halide
+relationship: BFO:0000051 CHEBI:16042 ! halide anion
+
[Term]
id: CHEBI:34905
name: paraquat
@@ -4724,6 +5559,13 @@ synonym: "NSAIDs" RELATED []
is_a: CHEBI:35472 ! anti-inflammatory drug
is_a: CHEBI:35842 ! antirheumatic drug
+[Term]
+id: CHEBI:35479
+name: alkali metal salt
+synonym: "alkali metal salts" RELATED []
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
[Term]
id: CHEBI:35480
name: analgesic
@@ -4984,6 +5826,13 @@ synonym: "antifungal drugs" RELATED []
synonym: "antifungals" RELATED []
is_a: CHEBI:33281 ! antimicrobial agent
+[Term]
+id: CHEBI:35740
+name: liposaccharide
+synonym: "liposaccharides" RELATED []
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:63299 ! carbohydrate derivative
+
[Term]
id: CHEBI:35757
name: monocarboxylic acid anion
@@ -5007,6 +5856,18 @@ is_a: CHEBI:33461 ! phosphorus oxoanion
relationship: is_conjugate_base_of CHEBI:26078 ! phosphoric acid
relationship: RO:0000087 CHEBI:77746 ! human metabolite
+[Term]
+id: CHEBI:35785
+name: sphingoid
+def: "Sphinganine, its homologs and stereoisomers, and the hydroxy and unsaturated derivatives of these compounds." []
+synonym: "Spd" RELATED []
+synonym: "sphingoid" EXACT []
+synonym: "sphingoid base" RELATED []
+synonym: "sphingoid bases" RELATED []
+synonym: "sphingoids" RELATED []
+is_a: CHEBI:26739 ! sphingolipid
+relationship: is_conjugate_base_of CHEBI:83876 ! cationic sphingoid
+
[Term]
id: CHEBI:35842
name: antirheumatic drug
@@ -5078,6 +5939,15 @@ synonym: "proteins" EXACT []
is_a: CHEBI:33695 ! information biomacromolecule
relationship: BFO:0000051 CHEBI:16541 ! protein polypeptide chain
+[Term]
+id: CHEBI:36093
+name: inorganic chloride
+synonym: "inorganic chloride salt" RELATED []
+synonym: "inorganic chloride salts" RELATED []
+synonym: "inorganic chlorides" RELATED []
+is_a: CHEBI:23114 ! chloride salt
+is_a: CHEBI:24839 ! inorganic salt
+
[Term]
id: CHEBI:36132
name: alicyclic ketone
@@ -5205,6 +6075,12 @@ synonym: "saturated organic heteromonocyclic parents" RELATED []
is_a: CHEBI:25693 ! organic heteromonocyclic compound
is_a: CHEBI:36388 ! saturated organic heterocyclic parent
+[Term]
+id: CHEBI:36527
+name: glycosylsphingoid
+synonym: "glycosylsphingoids" RELATED []
+is_a: CHEBI:25513 ! neutral glycosphingolipid
+
[Term]
id: CHEBI:36586
name: carbonyl compound
@@ -5244,6 +6120,14 @@ synonym: "organohalogen compounds" RELATED []
is_a: CHEBI:33285 ! heteroorganic entity
is_a: CHEBI:37578 ! halide
+[Term]
+id: CHEBI:36685
+name: chlorocarboxylic acid
+def: "A carboxylic acid containing at least one chloro group." []
+synonym: "chlorocarboxylic acids" RELATED []
+is_a: CHEBI:33575 ! carboxylic acid
+is_a: CHEBI:36683 ! organochlorine compound
+
[Term]
id: CHEBI:36688
name: heterotricyclic compound
@@ -5305,6 +6189,23 @@ is_a: CHEBI:33405 ! hydracid
relationship: is_conjugate_acid_of CHEBI:17514 ! cyanide
relationship: is_tautomer_of CHEBI:18407 ! hydrogen cyanide
+[Term]
+id: CHEBI:36902
+name: chalcogen hydride
+synonym: "chalcogen hydride" EXACT []
+synonym: "chalcogen hydrides" RELATED []
+is_a: CHEBI:33242 ! inorganic hydride
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:36908
+name: argon molecular entity
+synonym: "argon compounds" RELATED []
+synonym: "argon molecular entities" RELATED []
+synonym: "argon molecular entity" EXACT []
+is_a: CHEBI:33583 ! noble gas molecular entity
+relationship: BFO:0000051 CHEBI:49475 ! argon atom
+
[Term]
id: CHEBI:36914
name: inorganic ion
@@ -5391,6 +6292,11 @@ synonym: "mononuclear hydrides" RELATED []
synonym: "mononuclear parent hydrides" EXACT []
is_a: CHEBI:33692 ! hydrides
+[Term]
+id: CHEBI:37246
+name: elemental sodium
+is_a: CHEBI:26712 ! sodium molecular entity
+
[Term]
id: CHEBI:37323
name: 7,8-dimethylisoalloxazine
@@ -5623,6 +6529,12 @@ def: "A drug that has a strengthening effect on the heart or that can increase c
synonym: "cardiotonic drugs" RELATED []
is_a: CHEBI:35554 ! cardiovascular drug
+[Term]
+id: CHEBI:38164
+name: organic heteropentacyclic compound
+synonym: "organic heteropentacyclic compounds" RELATED []
+is_a: CHEBI:38166 ! organic heteropolycyclic compound
+
[Term]
id: CHEBI:38166
name: organic heteropolycyclic compound
@@ -5784,6 +6696,13 @@ synonym: "Na channel blocker" RELATED []
synonym: "sodium channel blockers" RELATED []
is_a: CHEBI:39000 ! sodium channel modulator
+[Term]
+id: CHEBI:38702
+name: inorganic sodium salt
+synonym: "inorganic sodium salts" RELATED []
+is_a: CHEBI:24839 ! inorganic salt
+is_a: CHEBI:26714 ! sodium salt
+
[Term]
id: CHEBI:38867
name: anaesthetic
@@ -6137,6 +7056,42 @@ synonym: "CARBOXY GROUP" EXACT []
synonym: "carboxyl group" RELATED []
is_a: CHEBI:33249 ! organyl group
+[Term]
+id: CHEBI:46963
+name: 2-aminooctadecene-1,3-diol
+def: "An aminodiol composed of any octadecene having hydroxy functional groups at positions 1 and 3 and an amino substituent at position 2." []
+synonym: "2-aminooctadecene-1,3-diol" EXACT []
+synonym: "2-aminooctadecene-1,3-diols" RELATED []
+is_a: CHEBI:22501 ! aminodiol
+is_a: CHEBI:35785 ! sphingoid
+
+[Term]
+id: CHEBI:46964
+name: 2-aminooctadec-4-ene-1,3-diol
+def: "A 2-aminooctadecene-1,3-diol having its double bond at position 4." []
+synonym: "2-aminooctadec-4-ene-1,3-diol" EXACT []
+synonym: "2-aminooctadec-4-ene-1,3-diols" RELATED []
+is_a: CHEBI:46963 ! 2-aminooctadecene-1,3-diol
+
+[Term]
+id: CHEBI:46965
+name: (2R,3S)-2-aminooctadec-4-ene-1,3-diol
+def: "A 2-aminooctadec-4-ene-1,3-diol having (2R,3S)-configuration." []
+synonym: "(2R,3S)-2-aminooctadec-4-ene-1,3-diol" EXACT []
+is_a: CHEBI:46964 ! 2-aminooctadec-4-ene-1,3-diol
+relationship: is_enantiomer_of CHEBI:26743 ! sphing-4-enine
+
+[Term]
+id: CHEBI:46967
+name: L-erythro-sphingosine
+def: "A (2R,3S)-2-aminooctadec-4-ene-1,3-diol in which the double bond has E geochemistry." []
+synonym: "(2R,3S,4E)-2-aminooctadec-4-ene-1,3-diol" EXACT []
+synonym: "L-Erythro-c18-sphingosine" RELATED []
+synonym: "L-erythro-sphing-4-enine" RELATED []
+is_a: CHEBI:46965 ! (2R,3S)-2-aminooctadec-4-ene-1,3-diol
+relationship: is_conjugate_base_of CHEBI:77956 ! L-erythro-sphingosine(1+)
+relationship: is_enantiomer_of CHEBI:16393 ! sphingosine
+
[Term]
id: CHEBI:47622
name: acetate ester
@@ -6196,6 +7151,23 @@ synonym: "sulfur oxides" RELATED []
is_a: CHEBI:24836 ! inorganic oxide
is_a: CHEBI:26835 ! sulfur molecular entity
+[Term]
+id: CHEBI:48210
+name: cyclopentafurofurochromene
+synonym: "cyclopentafurofurochromenes" RELATED []
+is_a: CHEBI:38104 ! oxacycle
+is_a: CHEBI:38164 ! organic heteropentacyclic compound
+
+[Term]
+id: CHEBI:48219
+name: disinfectant
+def: "An antimicrobial agent that is applied to non-living objects to destroy harmful microorganisms or to inhibit their activity." []
+synonym: "desinfectant" RELATED []
+synonym: "Desinfektionsmittel" RELATED []
+synonym: "disinfectants" RELATED []
+synonym: "disinfecting agent" RELATED []
+is_a: CHEBI:33281 ! antimicrobial agent
+
[Term]
id: CHEBI:48278
name: serotonergic drug
@@ -6436,6 +7408,16 @@ is_a: CHEBI:49168 ! dopa
is_a: CHEBI:84124 ! D-tyrosine derivative
relationship: is_enantiomer_of CHEBI:15765 ! L-dopa
+[Term]
+id: CHEBI:49475
+name: argon atom
+synonym: "18Ar" RELATED []
+synonym: "Ar" RELATED []
+synonym: "argon" EXACT []
+synonym: "argon" RELATED []
+is_a: CHEBI:33309 ! noble gas atom
+is_a: CHEBI:33560 ! p-block element atom
+
[Term]
id: CHEBI:49637
name: hydrogen atom
@@ -6550,6 +7532,16 @@ synonym: "onium ion" RELATED []
synonym: "onium ions" RELATED []
is_a: CHEBI:50312 ! onium compound
+[Term]
+id: CHEBI:50315
+name: chloronium
+synonym: "[ClH2](+)" RELATED []
+synonym: "chloranium" EXACT []
+synonym: "chloronium" EXACT []
+synonym: "H2Cl(+)" RELATED []
+is_a: CHEBI:50313 ! onium cation
+relationship: is_conjugate_acid_of CHEBI:17883 ! hydrogen chloride
+
[Term]
id: CHEBI:50325
name: proteinogenic amino-acid side-chain group
@@ -6737,6 +7729,15 @@ synonym: "organic molecular entities" RELATED []
is_a: CHEBI:33582 ! carbon group molecular entity
relationship: BFO:0000051 CHEBI:27594 ! carbon atom
+[Term]
+id: CHEBI:50902
+name: genotoxin
+def: "A role played by a chemical compound to induce direct or indirect DNA damage. Such damage can potentially lead to the formation of a malignant tumour, but DNA damage does not lead inevitably to the creation of cancerous cells." []
+synonym: "genotoxic agent" RELATED []
+synonym: "genotoxic agents" RELATED []
+synonym: "genotoxins" RELATED []
+is_a: CHEBI:52209 ! aetiopathogenetic role
+
[Term]
id: CHEBI:50903
name: carcinogenic agent
@@ -6980,6 +7981,13 @@ synonym: "medicament" RELATED []
synonym: "pharmaceuticals" RELATED []
is_a: CHEBI:33232 ! application
+[Term]
+id: CHEBI:52625
+name: inorganic hydroxy compound
+synonym: "inorganic hydroxides" RELATED []
+is_a: CHEBI:24651 ! hydroxides
+is_a: CHEBI:24835 ! inorganic molecular entity
+
[Term]
id: CHEBI:53000
name: epitope
@@ -7048,6 +8056,17 @@ synonym: "barbiturate dianion" RELATED []
is_a: CHEBI:25696 ! organic anion
relationship: is_conjugate_base_of CHEBI:16294 ! barbituric acid
+[Term]
+id: CHEBI:57756
+name: sphingosine(1+)
+def: "The cationic sphingoid resulting from the protonation of the amino group of sphingosine." []
+synonym: "(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-aminium" EXACT []
+synonym: "sphing-4-enine" RELATED []
+is_a: CHEBI:84410 ! sphingoid base(1+)
+relationship: is_conjugate_acid_of CHEBI:16393 ! sphingosine
+relationship: is_enantiomer_of CHEBI:77956 ! L-erythro-sphingosine(1+)
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+
[Term]
id: CHEBI:57869
name: 6-aminopenicillanic acid zwitterion
@@ -7059,6 +8078,17 @@ is_a: CHEBI:35238 ! amino acid zwitterion
relationship: is_conjugate_acid_of CHEBI:30938 ! 6-aminopenicillanate
relationship: is_tautomer_of CHEBI:16705 ! 6-aminopenicillanic acid
+[Term]
+id: CHEBI:57934
+name: psychosine(1+)
+def: "The ammonium ion resulting from the protonation of the amino group of psychosine." []
+synonym: "(2S,3R,4E)-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-en-2-aminium" EXACT []
+synonym: "(2S,3R,4E)-3-hydroxy-1-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadec-4-en-2-aminium" RELATED []
+synonym: "psychosine" RELATED []
+is_a: CHEBI:35274 ! ammonium ion
+relationship: is_conjugate_acid_of CHEBI:16874 ! psychosine
+relationship: RO:0000087 CHEBI:77746 ! human metabolite
+
[Term]
id: CHEBI:57981
name: D-phenylalanine zwitterion
@@ -7493,6 +8523,21 @@ def: "A carbohydrate derivative arising formally from the elimination of water f
synonym: "glycosyl compounds" RELATED []
is_a: CHEBI:63299 ! carbohydrate derivative
+[Term]
+id: CHEBI:63248
+name: oxidising agent
+def: "A substance that removes electrons from another reactant in a redox reaction." []
+synonym: "oxidant" RELATED []
+synonym: "oxidants" RELATED []
+synonym: "oxidiser" RELATED []
+synonym: "oxidisers" RELATED []
+synonym: "oxidising agents" RELATED []
+synonym: "oxidizer" RELATED []
+synonym: "oxidizers" RELATED []
+synonym: "oxidizing agent" RELATED []
+synonym: "oxidizing agents" RELATED []
+is_a: CHEBI:51086 ! chemical role
+
[Term]
id: CHEBI:63299
name: carbohydrate derivative
@@ -8050,6 +9095,20 @@ def: "Any metabolite produced by metabolism of a xenobiotic compound." []
synonym: "xenobiotic metabolites" RELATED []
is_a: CHEBI:25212 ! metabolite
+[Term]
+id: CHEBI:76413
+name: greenhouse gas
+def: "A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'." []
+synonym: "greenhouse gases" RELATED []
+is_a: CHEBI:51086 ! chemical role
+
+[Term]
+id: CHEBI:76414
+name: propellant
+def: "A compressed gas or liquid with a boiling point lower than room temperature which to used to propel and dispense liquids such as deodorants, insecticides, paints, etc. from aerosol cans." []
+synonym: "propellants" RELATED []
+is_a: CHEBI:33232 ! application
+
[Term]
id: CHEBI:76668
name: EC 2.7.* (P-containing group transferase) inhibitor
@@ -8562,6 +9621,32 @@ synonym: "N-acetylaminohydrolase inhibitor" RELATED []
synonym: "N-acetylaminohydrolase inhibitors" RELATED []
is_a: CHEBI:76807 ! EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
+[Term]
+id: CHEBI:77956
+name: L-erythro-sphingosine(1+)
+def: "A cationic sphingoid resulting from the protonation of the amino group of L-erythro-sphingosine; major species at pH 7.3." []
+synonym: "(2R,3S,4E)-1,3-dihydroxyoctadec-4-en-2-aminium" EXACT []
+synonym: "D-erythro-sphing-4-enine" RELATED []
+synonym: "L-erythro-sphing-4-enine(1+)" RELATED []
+is_a: CHEBI:83876 ! cationic sphingoid
+relationship: is_conjugate_acid_of CHEBI:46967 ! L-erythro-sphingosine
+relationship: is_enantiomer_of CHEBI:57756 ! sphingosine(1+)
+
+[Term]
+id: CHEBI:77974
+name: food packaging gas
+def: "A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container." []
+synonym: "food packaging gases" RELATED []
+is_a: CHEBI:64047 ! food additive
+
+[Term]
+id: CHEBI:78017
+name: food propellant
+def: "A propellant that is used to expel foods from an aerosol container." []
+synonym: "food propellants" RELATED []
+is_a: CHEBI:64047 ! food additive
+is_a: CHEBI:76414 ! propellant
+
[Term]
id: CHEBI:78113
name: fatty acid anion 3:0
@@ -8759,6 +9844,17 @@ synonym: "non-proteinogenic L-alpha-amino acids" RELATED []
is_a: CHEBI:15705 ! L-alpha-amino acid
is_a: CHEBI:83925 ! non-proteinogenic alpha-amino acid
+[Term]
+id: CHEBI:83876
+name: cationic sphingoid
+def: "An organic cation obtained by protonation of the amino function of any sphingoid" []
+synonym: "cationic sphingoids" RELATED []
+synonym: "sphingoid cation" RELATED []
+synonym: "sphingoid cations" RELATED []
+is_a: CHEBI:25697 ! organic cation
+is_a: CHEBI:35274 ! ammonium ion
+relationship: is_conjugate_acid_of CHEBI:35785 ! sphingoid
+
[Term]
id: CHEBI:83925
name: non-proteinogenic alpha-amino acid
@@ -8806,6 +9902,14 @@ is_a: CHEBI:25985 ! phenylalanine derivative
is_a: CHEBI:83811 ! proteinogenic amino acid derivative
relationship: has_functional_parent CHEBI:17295 ! L-phenylalanine
+[Term]
+id: CHEBI:84410
+name: sphingoid base(1+)
+def: "A cationic sphingoid obtained by protonation of the amino group of any 2-amino-1,3-dihydroxysphingoid base." []
+synonym: "2-amino-1,3-dihydroxysphingoid base(1+)" RELATED []
+synonym: "a sphingoid base" RELATED []
+is_a: CHEBI:83876 ! cationic sphingoid
+
[Term]
id: CHEBI:84735
name: algal metabolite
@@ -8820,6 +9924,16 @@ def: "Any metabolite (endogenous or exogenous) found in human blood serum sample
synonym: "human blood serum metabolites" RELATED []
is_a: CHEBI:77746 ! human metabolite
+[Term]
+id: CHEBI:85638
+name: haloacetate(1-)
+def: "A monocarboxylic acid anion resulting from the deprotonation of the carboxy group of a haloacetic acid." []
+synonym: "a haloacetate" RELATED []
+synonym: "haloacetate (1-)" RELATED []
+is_a: CHEBI:35757 ! monocarboxylic acid anion
+relationship: has_functional_parent CHEBI:30089 ! acetate
+relationship: is_conjugate_base_of CHEBI:16277 ! haloacetic acid
+
[Term]
id: CHEBI:86327
name: antifungal drug
diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl
index 86bd65a44e..4d097db134 100644
--- a/src/ontology/imports/chebi_import.owl
+++ b/src/ontology/imports/chebi_import.owl
@@ -376,6 +376,19 @@
+
+
+
+
+ A molecular entity that can transfer an electron to another molecular entity.
+ electron donor
+ Elektronendonator
+ donneur d'electron
+ electron donor
+
+
+
+
@@ -626,6 +639,158 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms.
+ WATER
+ Water
+ oxidane
+ water
+ BOUND WATER
+ H2O
+ HOH
+ Wasser
+ [OH2]
+ acqua
+ agua
+ aqua
+ dihydridooxygen
+ dihydrogen oxide
+ eau
+ hydrogen hydroxide
+ water
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ dioxygen
+ Disauerstoff
+ E 948
+ E-948
+ E948
+ O2
+ OXYGEN MOLECULE
+ Oxygen
+ [OO]
+ dioxygene
+ molecular oxygen
+ dioxygen
+
+
+
+
@@ -911,6 +1076,25 @@
+
+
+
+
+
+ A monoatomic monoanion resulting from the addition of an electron to any halogen atom.
+ halide ions
+ HX
+ Halide
+ a halide anion
+ halide anions
+ halide(1-)
+ halides
+ halogen anion
+ halide anion
+
+
+
+
@@ -1095,6 +1279,58 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ hydridooxygenate(1-)
+ hydroxide
+ oxidanide
+ HO-
+ HYDROXIDE ION
+ Hydroxide ion
+ OH(-)
+ OH-
+ hydroxide
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A monocarboxylic acid that is acetic acid in which one of the methyl hydrogens has been replaced by a halogen atom.
+ haloacetic acid
+
+
+
+
@@ -1135,6 +1371,157 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A sphing-4-enine in which the double bond is trans.
+ (2S,3R,4E)-2-aminooctadec-4-ene-1,3-diol
+ Sphingosine
+ (2S,3R)-(E)-2-amino-1,3-dihydroxy-4-octadecene
+ (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-ene-1-ol
+ (2S,3R,4E)-2-amino-4-octadecene-1,3-diol
+ (2S,3R,E)-2-aminooctadec-4-ene-1,3-diol
+ (4E)-sphing-4-enine
+ (4E)-sphingenine
+ (E)-2-amino-4-octadecan-1,3-diol
+ (E)-D-erythro-4-octadecene-1,3-diol
+ 2-amino-4-octadecene-1,3-diol
+ C18 sphingosine
+ D-(+)-erythro-1,3-dihydroxy-2-amino-4-trans-octadecene
+ D-erythro-sphingosine
+ Sph
+ Sphing-4-enine
+ Sphingenine
+ Sphingoid
+ Sphingosine d18:1
+ sphingosin
+ trans-4-sphingenine
+ trans-D-erythro-2-amino-4-octadecene-1,3-diol
+ sphingosine
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond. A colourless, odourless gas under normal conditions, it is produced during respiration by all animals, fungi and microorganisms that depend directly or indirectly on living or decaying plants for food.
+ CARBON DIOXIDE
+ Carbon dioxide
+ carbon dioxide
+ dioxidocarbon
+ CO2
+ E 290
+ E-290
+ E290
+ R-744
+ [CO2]
+ carbonic anhydride
+ carbon dioxide
+
+
+
+
@@ -1371,6 +1758,120 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ An aldehyde resulting from the formal oxidation of methanol.
+ FORMALDEHYDE
+ Formaldehyde
+ formaldehyde
+ FORMALIN
+ Formaldehyd
+ Formalin
+ Methanal
+ Methylene oxide
+ Oxomethane
+ Oxomethylene
+ formaldehyde
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A glycosylsphingoid consisting of sphingosine having a beta-D-galactosyl residue attached at the 1-position.
+ (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl beta-D-galactopyranoside
+ Psychosine
+ (2S,3R,4E)-2-amino-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-ene
+ 1-O-beta-D-galactopyranosylsphingosine
+ 1-O-beta-D-galactosylsphingosine
+ 1-beta-D-galactosphingosine
+ 1-beta-D-galactosylsphingosine
+ Galactosylsphingosine
+ O-Galactosylsphingosine
+ O-galactosylsphingosine
+ sphingosine galactoside
+ psychosine
+
+
+
+
@@ -2254,6 +2755,50 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A mononuclear parent hydride consisting of covalently bonded hydrogen and chlorine atoms.
+ Hydrogen chloride
+ chlorane
+ chloridohydrogen
+ hydrogen chloride
+ Chlorwasserstoff
+ HCl
+ Hydrochloride
+ Hydrogenchlorid
+ Wasserstoffchlorid
+ [HCl]
+ chlorure d'hydrogene
+ cloruro de hidrogeno
+ hydrochloric acid
+ hydrogen chloride
+
+
+
+
@@ -2319,27 +2864,100 @@
-
-
+
+
+
+
+ An optically active form of tyrosine having L-configuration.
+ L-Tyrosine
+ L-tyrosine
+ (-)-alpha-amino-p-hydroxyhydrocinnamic acid
+ (2S)-2-amino-3-(4-hydroxyphenyl)propanoic acid
+ (S)-(-)-Tyrosine
+ (S)-2-Amino-3-(p-hydroxyphenyl)propionic acid
+ (S)-3-(p-Hydroxyphenyl)alanine
+ (S)-Tyrosine
+ (S)-alpha-amino-4-hydroxybenzenepropanoic acid
+ 4-hydroxy-L-phenylalanine
+ L-Tyrosin
+ TYROSINE
+ Tyr
+ Tyrosine
+ Y
+ L-tyrosine
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A halide anion formed when chlorine picks up an electron to form an an anion.
+ Chloride
+ chloride
+ chloride(1-)
+ CHLORIDE ION
+ Chloride ion
+ Chloride(1-)
+ Chlorine anion
+ Cl(-)
+ Cl-
+ chloride
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
- An optically active form of tyrosine having L-configuration.
- L-Tyrosine
- L-tyrosine
- (-)-alpha-amino-p-hydroxyhydrocinnamic acid
- (2S)-2-amino-3-(4-hydroxyphenyl)propanoic acid
- (S)-(-)-Tyrosine
- (S)-2-Amino-3-(p-hydroxyphenyl)propionic acid
- (S)-3-(p-Hydroxyphenyl)alanine
- (S)-Tyrosine
- (S)-alpha-amino-4-hydroxybenzenepropanoic acid
- 4-hydroxy-L-phenylalanine
- L-Tyrosin
- TYROSINE
- Tyr
- Tyrosine
- Y
- L-tyrosine
+ An elemental molecule consisting of two trivalently-bonded nitrogen atoms.
+ dinitrogen
+ N#N
+ N2
+ Nitrogen
+ molecular nitrogen
+ dinitrogen
@@ -2421,6 +3039,25 @@
+
+
+
+
+
+
+
+
+
+
+ hydrogen halide
+ hydrogen halides
+ HX
+ hydrogen halides
+ hydrogen halide
+
+
+
+
@@ -2707,6 +3344,23 @@
+
+
+
+
+
+
+
+
+
+
+ Any of a group of related and highly toxic secondary metabolites (mycotoxins) whose main structural feature is a fused coumarin-bis(dihydrofuran) ring system and which are produced by strains of the moulds Aspergillus flavus or A. parasiticus, together with further metabolites of these mycotoxins
+ aflatoxins
+ aflatoxin
+
+
+
+
@@ -2728,6 +3382,25 @@
+
+
+
+
+
+
+ alkali metals
+ Alkalimetall
+ Alkalimetalle
+ alkali metal
+ metal alcalin
+ metal alcalino
+ metales alcalinos
+ metaux alcalins
+ alkali metal atom
+
+
+
+
@@ -2749,6 +3422,44 @@
+
+
+
+
+ Highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. It could be used as an antineoplastic agent, but it might be very toxic, with carcinogenic, mutagenic, teratogenic, and immunosuppressant actions. It could also be used as a component of poison gases.
+ alkylating agent
+
+
+
+
+
+
+
+
+
+ An alcohol containing an amino functional group in addition to the alcohol-defining hydroxy group.
+ amino alcohols
+ aminoalcohol
+ aminoalcohols
+ amino alcohol
+
+
+
+
+
+
+
+
+
+ An amino alcohol having two hydroxy functional groups.
+ amino diol
+ amino diols
+ aminodiols
+ aminodiol
+
+
+
+
@@ -2883,6 +3594,38 @@
+
+
+
+
+ cadmium
+ 48Cd
+ Cd
+ Kadmium
+ cadmio
+ cadmium
+ cadmium atom
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ cadmium compounds
+ cadmium molecular entities
+ cadmium molecular entity
+
+
+
+
@@ -2963,6 +3706,24 @@
+
+
+
+
+
+
+
+
+
+
+
+ chloride salts
+ chlorides
+ chloride salt
+
+
+
+
@@ -3002,6 +3763,35 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A haloacetate(1-) resulting from the deprotonation of the carboxy group of chloroacetic acid.
+ chloroacetate
+ Chloroacetic acid ion(1-)
+ chloroacetate anion
+ chloroacetate(1-)
+ mono-chloroacetate
+ monochloroacetate anion
+ monochloroacetic acid anion
+ chloroacetate
+
+
+
+
@@ -3184,6 +3974,28 @@
+
+
+
+
+
+ monoatomic anions
+ monoatomic anion
+
+
+
+
+
+
+
+
+
+ monoatomic cations
+ monoatomic cation
+
+
+
+
@@ -3249,6 +4061,18 @@
+
+
+
+
+
+ A glycosphingolipid is a glycolipid that is a carbohydrate-containing derivative of a sphingoid or ceramide. It is understood that the carbohydrate residue is attached by a glycosidic linkage to O-1 of the sphingoid.
+ glycosphingolipids
+ glycosphingolipid
+
+
+
+
@@ -3558,6 +4382,61 @@
+
+
+
+
+
+ anorganisches Salz
+ inorganic salts
+ inorganic salt
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A salt is an assembly of cations and anions.
+ salt
+ Salz
+ Salze
+ ionic compound
+ ionic compounds
+ sal
+ sales
+ salts
+ sel
+ sels
+ salt
+
+
+
+
+
+
+
+
+
+ monoatomic ions
+ monoatomic ion
+
+
+
+
@@ -3710,6 +4589,18 @@
+
+
+
+
+
+ a metal cation
+ metal cations
+ metal cation
+
+
+
+
@@ -3763,6 +4654,19 @@
+
+
+
+
+
+ A molecule all atoms of which have the same atomic number.
+ homoatomic molecule
+ homoatomic molecules
+ elemental molecule
+
+
+
+
@@ -3818,6 +4722,47 @@
+
+
+
+
+ monoatomic monocations
+ monovalent cation
+ monovalent inorganic cations
+ monoatomic monocation
+
+
+
+
+
+
+
+
+ An agent that increases the frequency of mutations above the normal background level, usually by interacting directly with DNA and causing it damage, including base substitution.
+ mutagene
+ mutagenes
+ mutagenic agent
+ mutageno
+ mutagenos
+ mutagens
+ mutagen
+
+
+
+
+
+
+
+
+
+ Poisonous substance produced by fungi.
+ fungal toxins
+ mycotoxins
+ mycotoxin
+
+
+
+
@@ -3829,6 +4774,17 @@
+
+
+
+
+ Any glycosphingolipid containing unsubstituted glycosyl moieties.
+ neutral glycosphingolipids
+ neutral glycosphingolipid
+
+
+
+
@@ -4394,11 +5350,137 @@
- An aliphatic monocarboxylic acid with a chain length of less than C6. If any non-hydrocarbon substituent is present, the compound is not normally regarded as a short-chain fatty acid.
- SCFA
- SCFAs
- short-chain fatty acids
- short-chain fatty acid
+ An aliphatic monocarboxylic acid with a chain length of less than C6. If any non-hydrocarbon substituent is present, the compound is not normally regarded as a short-chain fatty acid.
+ SCFA
+ SCFAs
+ short-chain fatty acids
+ short-chain fatty acid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ sodium
+ 11Na
+ Na
+ Natrium
+ natrium
+ sodio
+ sodium
+ sodium atom
+
+
+
+
+
+
+
+
+
+ An inorganic chloride salt having sodium(1+) as the counterion.
+ sodium chloride
+ Kochsalz
+ NaCl
+ Natriumchlorid
+ chlorure de sodium
+ cloruro sodico
+ common salt
+ halite
+ natrii chloridum
+ rock salt
+ salt
+ table salt
+ sodium chloride
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ sodium compounds
+ sodium molecular entities
+ sodium molecular entity
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Any alkali metal salt having sodium(1+) as the cation.
+ Natriumsalz
+ Natriumsalze
+ sodium salts
+ sodium salt
+
+
+
+
+
+
+
+
+ A 2-aminooctadecene-1,3-diol having (2S,3R)-configuration.
+ sphingenines
+ sphingenine
+
+
+
+
+
+
+
+
+
+
+ Sphingolipids are a complex family of compounds that share a common structural feature, a sphingoid base backbone.
+ sphingolipids
+ sphingolipid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A sphingenine in which the C=C double bond is located at the 4-position.
+ (2S,3R)-2-aminooctadec-4-ene-1,3-diol
+ sphing-4-enine
+ 4-sphingenine
+ sphing-4-enine
@@ -4917,6 +5999,56 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A chlorocarboxylic acid that is acetic acid carrying a 2-chloro substituent.
+ Chloroacetic acid
+ chloroacetic acid
+ 2-chloro-acetic acid
+ 2-chloro-ethanoic acid
+ 2-chloroacetic acid
+ Acide chloracetique
+ Acide chloroacetique
+ Acide monochloracetique
+ CAA
+ Chloroethanoic acid
+ Monochloressigsaeure
+ alpha-chloro-acetic acid
+ chloracetic acid
+ monochloroacetic acid
+ monochloroethanoic acid
+ chloroacetic acid
+
+
+
+
@@ -5382,6 +6514,32 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A monoatomic monocation obtained from sodium.
+ sodium cation
+ sodium(1+)
+ sodium(1+) ion
+ sodium(I) cation
+ Na(+)
+ Na+
+ SODIUM ION
+ sodium(1+)
+
+
+
+
@@ -5538,6 +6696,30 @@
+
+
+
+
+
+
+
+
+
+
+
+ aquahydrogen(1+)
+ oxidanium
+ oxonium
+ trihydridooxygen(1+)
+ H3O(+)
+ Hydronium cation
+ Hydronium ion
+ [OH3](+)
+ oxonium
+
+
+
+
@@ -5556,6 +6738,26 @@
+
+
+
+
+
+
+
+
+
+
+ dioxidenium
+ hydridodioxygen(1+)
+ HO2(+)
+ HOO(+)
+ [HO2](+)
+ hydridodioxygen(1+)
+
+
+
+
@@ -5592,6 +6794,64 @@
+
+
+
+
+
+
+
+
+
+
+ diazynediium
+ HNNH(2+)
+ [HNNH](2+)
+ diazynediium
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ diazynium
+ HN2+
+ N#NH(+)
+ diazynium
+
+
+
+
+
+
+
+
+
+ helium
+ 2He
+ He
+ Helium
+ helio
+ helium
+ helium atom
+
+
+
+
@@ -6591,6 +7851,18 @@
+
+
+
+
+ A monoatomic entity is a molecular entity consisting of a single atom.
+ atomic entity
+ monoatomic entities
+ monoatomic entity
+
+
+
+
@@ -6768,6 +8040,19 @@
+
+
+
+
+ A molecular entity all atoms of which have the same atomic number.
+ homoatomic entity
+ homoatomic molecular entities
+ homoatomic molecular entity
+ elemental molecular entity
+
+
+
+
@@ -6781,6 +8066,45 @@
+
+
+
+
+
+
+ elemental oxygen
+
+
+
+
+
+
+
+
+ diatomic oxygen
+
+
+
+
+
+
+
+
+ diatomic nitrogen
+
+
+
+
+
+
+
+
+
+ elemental nitrogen
+
+
+
+
@@ -6886,6 +8210,25 @@
+
+
+
+
+
+
+
+
+
+
+ Any material that can be ingested by an organism.
+ foods
+ foodstuff
+ foodstuffs
+ food
+
+
+
+
@@ -6907,6 +8250,23 @@
+
+
+
+
+
+
+
+
+
+
+ A molecular entity containing one or more atoms of an alkali metal.
+ alkali metal molecular entities
+ alkali metal molecular entity
+
+
+
+
@@ -7034,6 +8394,30 @@
+
+
+
+
+
+
+ noble gas
+ noble gases
+ Edelgas
+ Edelgase
+ gas noble
+ gases nobles
+ gaz noble
+ gaz nobles
+ group 18 elements
+ group VIII elements
+ inert gases
+ noble gas
+ rare gases
+ noble gas atom
+
+
+
+
@@ -7171,6 +8555,59 @@
+
+
+
+
+
+ monoatomic monoanions
+ monoatomic monoanion
+
+
+
+
+
+
+
+
+
+ elemental chlorine
+
+
+
+
+
+
+
+
+
+ atomic chlorine
+ monoatomic chlorine
+
+
+
+
+
+
+
+
+ monoatomic halogens
+ monoatomic halogen
+
+
+
+
+
+
+
+
+ elemental halogen
+ elemental halogens
+ elemental halogen
+
+
+
+
@@ -7226,6 +8663,19 @@
+
+
+
+
+
+
+ elemental pnictogen
+ elemental pnictogens
+ elemental pnictogen
+
+
+
+
@@ -7287,6 +8737,16 @@
+
+
+
+
+ alkali metal cations
+ alkali metal cation
+
+
+
+
@@ -7394,6 +8854,18 @@
+
+
+
+
+ Any member of class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar part acylated by one or more fatty acids and the glycerol part may be absent.
+ Glycolipid
+ glycolipids
+ glycolipid
+
+
+
+
@@ -7463,6 +8935,25 @@
+
+
+
+
+
+
+
+
+
+
+ A main group molecular entity containing one or more atoms of any noble gas.
+ noble gas molecular entity
+ noble gas compounds
+ noble gas molecular entities
+ noble gas molecular entity
+
+
+
+
@@ -7756,6 +9247,25 @@
+
+
+
+
+
+
+
+
+
+
+
+ helium molecular entity
+ helium compounds
+ helium molecular entities
+ helium molecular entity
+
+
+
+
@@ -7767,6 +9277,18 @@
+
+
+
+
+ oxygen hydride
+ hydrides of oxygen
+ oxygen hydrides
+ oxygen hydride
+
+
+
+
@@ -8337,6 +9859,24 @@
+
+
+
+
+
+
+
+
+
+
+
+ halide salts
+ halides
+ halide salt
+
+
+
+
@@ -8755,6 +10295,17 @@
+
+
+
+
+
+ alkali metal salts
+ alkali metal salt
+
+
+
+
@@ -9119,6 +10670,17 @@
+
+
+
+
+
+ liposaccharides
+ liposaccharide
+
+
+
+
@@ -9165,6 +10727,27 @@
+
+
+
+
+
+
+
+
+
+
+ Sphinganine, its homologs and stereoisomers, and the hydroxy and unsaturated derivatives of these compounds.
+ sphingoid
+ Spd
+ sphingoid base
+ sphingoid bases
+ sphingoids
+ sphingoid
+
+
+
+
@@ -9278,6 +10861,19 @@
+
+
+
+
+
+ inorganic chloride salt
+ inorganic chloride salts
+ inorganic chlorides
+ inorganic chloride
+
+
+
+
@@ -9484,6 +11080,16 @@
+
+
+
+
+ glycosylsphingoids
+ glycosylsphingoid
+
+
+
+
@@ -9549,6 +11155,18 @@
+
+
+
+
+
+ A carboxylic acid containing at least one chloro group.
+ chlorocarboxylic acids
+ chlorocarboxylic acid
+
+
+
+
@@ -9648,6 +11266,36 @@
+
+
+
+
+
+ chalcogen hydride
+ chalcogen hydrides
+ chalcogen hydride
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ argon molecular entity
+ argon compounds
+ argon molecular entities
+ argon molecular entity
+
+
+
+
@@ -9784,6 +11432,15 @@
+
+
+
+
+ elemental sodium
+
+
+
+
@@ -10150,6 +11807,16 @@
+
+
+
+
+ organic heteropentacyclic compounds
+ organic heteropentacyclic compound
+
+
+
+
@@ -10383,6 +12050,17 @@
+
+
+
+
+
+ inorganic sodium salts
+ inorganic sodium salt
+
+
+
+
@@ -11007,6 +12685,73 @@
+
+
+
+
+
+ An aminodiol composed of any octadecene having hydroxy functional groups at positions 1 and 3 and an amino substituent at position 2.
+ 2-aminooctadecene-1,3-diol
+ 2-aminooctadecene-1,3-diols
+ 2-aminooctadecene-1,3-diol
+
+
+
+
+
+
+
+
+ A 2-aminooctadecene-1,3-diol having its double bond at position 4.
+ 2-aminooctadec-4-ene-1,3-diol
+ 2-aminooctadec-4-ene-1,3-diols
+ 2-aminooctadec-4-ene-1,3-diol
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A 2-aminooctadec-4-ene-1,3-diol having (2R,3S)-configuration.
+ (2R,3S)-2-aminooctadec-4-ene-1,3-diol
+ (2R,3S)-2-aminooctadec-4-ene-1,3-diol
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A (2R,3S)-2-aminooctadec-4-ene-1,3-diol in which the double bond has E geochemistry.
+ (2R,3S,4E)-2-aminooctadec-4-ene-1,3-diol
+ L-Erythro-c18-sphingosine
+ L-erythro-sphing-4-enine
+ L-erythro-sphingosine
+
+
+
+
@@ -11104,6 +12849,31 @@
+
+
+
+
+
+ cyclopentafurofurochromenes
+ cyclopentafurofurochromene
+
+
+
+
+
+
+
+
+ An antimicrobial agent that is applied to non-living objects to destroy harmful microorganisms or to inhibit their activity.
+ Desinfektionsmittel
+ desinfectant
+ disinfectants
+ disinfecting agent
+ disinfectant
+
+
+
+
@@ -11461,6 +13231,20 @@
+
+
+
+
+
+ argon
+ 18Ar
+ Ar
+ argon
+ argon atom
+
+
+
+
@@ -11633,6 +13417,25 @@
+
+
+
+
+
+
+
+
+
+
+ chloranium
+ chloronium
+ H2Cl(+)
+ [ClH2](+)
+ chloronium
+
+
+
+
@@ -11906,6 +13709,19 @@
+
+
+
+
+ A role played by a chemical compound to induce direct or indirect DNA damage. Such damage can potentially lead to the formation of a malignant tumour, but DNA damage does not lead inevitably to the creation of cancerous cells.
+ genotoxic agent
+ genotoxic agents
+ genotoxins
+ genotoxin
+
+
+
+
@@ -12293,6 +14109,17 @@
+
+
+
+
+
+ inorganic hydroxides
+ inorganic hydroxy compound
+
+
+
+
@@ -12419,6 +14246,36 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ The cationic sphingoid resulting from the protonation of the amino group of sphingosine.
+ (2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-aminium
+ sphing-4-enine
+ sphingosine(1+)
+
+
+
+
@@ -12444,6 +14301,31 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ The ammonium ion resulting from the protonation of the amino group of psychosine.
+ (2S,3R,4E)-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-en-2-aminium
+ (2S,3R,4E)-3-hydroxy-1-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadec-4-en-2-aminium
+ psychosine
+ psychosine(1+)
+
+
+
+
@@ -13227,6 +15109,25 @@
+
+
+
+
+ A substance that removes electrons from another reactant in a redox reaction.
+ oxidant
+ oxidants
+ oxidiser
+ oxidisers
+ oxidising agents
+ oxidizer
+ oxidizers
+ oxidizing agent
+ oxidizing agents
+ oxidising agent
+
+
+
+
@@ -13982,6 +15883,28 @@
+
+
+
+
+ A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'.
+ greenhouse gases
+ greenhouse gas
+
+
+
+
+
+
+
+
+ A compressed gas or liquid with a boiling point lower than room temperature which to used to propel and dispense liquids such as deodorants, insecticides, paints, etc. from aerosol cans.
+ propellants
+ propellant
+
+
+
+
@@ -14651,6 +16574,54 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A cationic sphingoid resulting from the protonation of the amino group of L-erythro-sphingosine; major species at pH 7.3.
+ (2R,3S,4E)-1,3-dihydroxyoctadec-4-en-2-aminium
+ D-erythro-sphing-4-enine
+ L-erythro-sphing-4-enine(1+)
+ L-erythro-sphingosine(1+)
+
+
+
+
+
+
+
+
+ A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container.
+ food packaging gases
+ food packaging gas
+
+
+
+
+
+
+
+
+
+ A propellant that is used to expel foods from an aerosol container.
+ food propellants
+ food propellant
+
+
+
+
@@ -14971,6 +16942,26 @@
+
+
+
+
+
+
+
+
+
+
+
+ An organic cation obtained by protonation of the amino function of any sphingoid
+ cationic sphingoids
+ sphingoid cation
+ sphingoid cations
+ cationic sphingoid
+
+
+
+
@@ -15058,6 +17049,18 @@
+
+
+
+
+ A cationic sphingoid obtained by protonation of the amino group of any 2-amino-1,3-dihydroxysphingoid base.
+ 2-amino-1,3-dihydroxysphingoid base(1+)
+ a sphingoid base
+ sphingoid base(1+)
+
+
+
+
@@ -15080,6 +17083,30 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A monocarboxylic acid anion resulting from the deprotonation of the carboxy group of a haloacetic acid.
+ a haloacetate
+ haloacetate (1-)
+ haloacetate(1-)
+
+
+
+
diff --git a/src/ontology/imports/cl_import.obo b/src/ontology/imports/cl_import.obo
index 6ed1ba3b59..4de5cfd85f 100644
--- a/src/ontology/imports/cl_import.obo
+++ b/src/ontology/imports/cl_import.obo
@@ -1,6 +1,5 @@
format-version: 1.2
ontology: mondo/imports/cl_import
-owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\n\n############################\n# Classes\n############################\n\n# Class: ()\n\nEquivalentClasses( ObjectIntersectionOf( ObjectComplementOf(ObjectSomeValuesFrom( ))))\n\n\nEquivalentClasses(ObjectComplementOf(ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\n)
[Term]
id: CL:0000000
@@ -2542,6 +2541,29 @@ is_a: CL:0000738 {is_inferred="true"} ! leukocyte
intersection_of: CL:0000738 ! leukocyte
intersection_of: RO:0002202 CL:0000049 ! common myeloid progenitor
+[Term]
+id: CL:0000771
+name: eosinophil
+namespace: cell
+def: "Any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Eosinophils are CD9-positive, CD191-positive, and CD193-positive." [GOC:add, GOC:amm, GOC:dsd, GOC:tfm, ISBN:0721601464, PMCID:PMC2626675, PMID:10914487, PMID:1662676]
+comment: Eosinophils are also CD14-negative, CD32-positive, CD44-positive, CD48-positive, CD69-positive, CD192-negative, MBP1-positive, MBP2-positive, TLR2-negative, TLR4-negative, and lineage-negative (B220, CD2, CD14, CD19, CD56, CD71, CD117, CD123, CD235a (glycophorin A), and TER119). The cytokines IL-3, IL-5, and GM-CSF are involved in their development and differentiation. Usually considered CD16-negative, CD16 is observed on eosinophilic metamyelocyte.
+synonym: "eosinocyte" EXACT []
+synonym: "eosinophilic granulocyte" EXACT []
+synonym: "eosinophilic leucocyte" EXACT []
+synonym: "eosinophilic leukocyte" EXACT []
+synonym: "polymorphonuclear leucocyte" BROAD []
+synonym: "polymorphonuclear leukocyte" BROAD []
+xref: BTO:0000399
+xref: CALOHA:TS-0279
+xref: FMA:62861
+is_a: CL:0000094 {is_inferred="true"} ! granulocyte
+intersection_of: CL:0000094 ! granulocyte
+intersection_of: RO:0002104 PR:000001254
+intersection_of: RO:0002104 PR:000001255
+intersection_of: RO:0002104 PR:000001307
+intersection_of: RO:0002104 PR:000001343
+intersection_of: RO:0002104 PR:000005178
+
[Term]
id: CL:0000775
name: neutrophil
diff --git a/src/ontology/imports/cl_import.owl b/src/ontology/imports/cl_import.owl
index 4ee7ebf1c0..b7a7c8c453 100644
--- a/src/ontology/imports/cl_import.owl
+++ b/src/ontology/imports/cl_import.owl
@@ -7631,6 +7631,73 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Eosinophils are CD9-positive, CD191-positive, and CD193-positive.
+ polymorphonuclear leucocyte
+ polymorphonuclear leukocyte
+ BTO:0000399
+ CALOHA:TS-0279
+ FMA:62861
+ eosinocyte
+ eosinophilic granulocyte
+ eosinophilic leucocyte
+ eosinophilic leukocyte
+ cell
+ Eosinophils are also CD14-negative, CD32-positive, CD44-positive, CD48-positive, CD69-positive, CD192-negative, MBP1-positive, MBP2-positive, TLR2-negative, TLR4-negative, and lineage-negative (B220, CD2, CD14, CD19, CD56, CD71, CD117, CD123, CD235a (glycophorin A), and TER119). The cytokines IL-3, IL-5, and GM-CSF are involved in their development and differentiation. Usually considered CD16-negative, CD16 is observed on eosinophilic metamyelocyte.
+ eosinophil
+
+
+
+
+
+ true
+
+
+
+
+ Any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Eosinophils are CD9-positive, CD191-positive, and CD193-positive.
+ GOC:add
+ GOC:amm
+ GOC:dsd
+ GOC:tfm
+ ISBN:0721601464
+ PMCID:PMC2626675
+ PMID:10914487
+ PMID:1662676
+
+
+
+
@@ -20928,6 +20995,12 @@
+
+
+
+
+
+
diff --git a/src/ontology/imports/cl_terms.txt b/src/ontology/imports/cl_terms.txt
index f004818060..a99dab4837 100644
--- a/src/ontology/imports/cl_terms.txt
+++ b/src/ontology/imports/cl_terms.txt
@@ -1,79 +1,465 @@
?cls
+http://purl.obolibrary.org/obo/CL_0000000
+http://purl.obolibrary.org/obo/CL_0000003
+http://purl.obolibrary.org/obo/CL_0000005
+http://purl.obolibrary.org/obo/CL_0000006
+http://purl.obolibrary.org/obo/CL_0000008
+http://purl.obolibrary.org/obo/CL_0000011
+http://purl.obolibrary.org/obo/CL_0000014
+http://purl.obolibrary.org/obo/CL_0000015
+http://purl.obolibrary.org/obo/CL_0000017
+http://purl.obolibrary.org/obo/CL_0000018
http://purl.obolibrary.org/obo/CL_0000019
+http://purl.obolibrary.org/obo/CL_0000020
+http://purl.obolibrary.org/obo/CL_0000027
+http://purl.obolibrary.org/obo/CL_0000029
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+http://purl.obolibrary.org/obo/CL_0002585
+http://purl.obolibrary.org/obo/CL_0002597
+http://purl.obolibrary.org/obo/CL_0002598
+http://purl.obolibrary.org/obo/CL_0002625
+http://purl.obolibrary.org/obo/CL_0002632
+http://purl.obolibrary.org/obo/CL_0002672
+http://purl.obolibrary.org/obo/CL_0002676
+http://purl.obolibrary.org/obo/CL_0002679
+http://purl.obolibrary.org/obo/CL_0005012
+http://purl.obolibrary.org/obo/CL_0005020
+http://purl.obolibrary.org/obo/CL_0005022
+http://purl.obolibrary.org/obo/CL_0005026
+http://purl.obolibrary.org/obo/CL_0007000
+http://purl.obolibrary.org/obo/CL_0007004
+http://purl.obolibrary.org/obo/CL_0007009
+http://purl.obolibrary.org/obo/CL_0008000
+http://purl.obolibrary.org/obo/CL_0008001
+http://purl.obolibrary.org/obo/CL_0008007
http://purl.obolibrary.org/obo/CL_0008019
+http://purl.obolibrary.org/obo/CL_0008024
+http://purl.obolibrary.org/obo/CL_0010001
+http://purl.obolibrary.org/obo/CL_0010004
+http://purl.obolibrary.org/obo/CL_0010009
http://purl.obolibrary.org/obo/CL_0011012
+http://purl.obolibrary.org/obo/CL_0011115
+http://purl.obolibrary.org/obo/CL_1000312
+http://purl.obolibrary.org/obo/CL_1000322
+http://purl.obolibrary.org/obo/CL_1000331
+http://purl.obolibrary.org/obo/CL_1000428
+http://purl.obolibrary.org/obo/CL_1000486
+http://purl.obolibrary.org/obo/CL_1001319
http://purl.obolibrary.org/obo/CL_1001428
+http://purl.obolibrary.org/obo/CL_1001610
+http://purl.obolibrary.org/obo/CL_2000000
+http://purl.obolibrary.org/obo/CL_2000029
+http://purl.obolibrary.org/obo/CL_2000032
+http://purl.obolibrary.org/obo/CL_2000055
+http://purl.obolibrary.org/obo/cl#has_completed
+http://purl.obolibrary.org/obo/cl#has_high_plasma_membrane_amount
+http://purl.obolibrary.org/obo/cl#has_low_plasma_membrane_amount
+http://purl.obolibrary.org/obo/cl#has_not_completed
+http://purl.obolibrary.org/obo/cl#lacks_part
+http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part
diff --git a/src/ontology/imports/ecto_import.owl b/src/ontology/imports/ecto_import.owl
new file mode 100644
index 0000000000..1e2a03b026
--- /dev/null
+++ b/src/ontology/imports/ecto_import.owl
@@ -0,0 +1,3268 @@
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+
+
+ A radiation exposure event involving the interaction of an exposure receptor to radiation.
+ radiation exposure
+ radiation exposure event
+ exposure to radiation
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A radiation exposure event involving the interaction of an exposure receptor to electromagnetic radiation.
+ electromagnetic radiation exposure
+ electromagnetic radiation exposure event
+ exposure to electromagnetic radiation
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A radiation exposure event involving the interaction of an exposure receptor to ultraviolet radiation.
+ http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C44462
+ ultraviolet radiation exposure
+ ultraviolet radiation exposure event
+
+ exposure to ultraviolet radiation
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A radiation exposure event involving the interaction of an exposure receptor to visible light radiation.
+ visible light radiation exposure
+ visible light radiation exposure event
+ exposure to visible light radiation
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to environmental material. Exposure may be through a variety of means, including through the air or through ingestion.
+ environmental material exposure
+ environmental material exposure event
+ exposure to portion of environmental material
+ exposure to environmental material
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to organic. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ organic molecular entity: Any molecular entity that contains carbon.
+ MRE:0000128
+ organic exposure
+ organic exposure event
+ exposure to organic compounds
+ exposure to organic entity
+ exposure to organic molecular entities
+ exposure to organic molecular entity
+
+ exposure to organic
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to organic cyclic compound. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ organic cyclic compound: Any organic molecule that consists of atoms connected in the form of a ring.
+ organic cyclic compound exposure
+ organic cyclic compound exposure event
+ exposure to organic cyclic compounds
+ exposure to organic cyclic compound
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to corticosteroid. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ corticosteroid: A natural or synthetic analogue of the hormones secreted by the adrenal gland.
+ corticosteroid exposure
+ corticosteroid exposure event
+ exposure to corticoides
+ exposure to corticosteroides
+ exposure to corticosteroids
+ exposure to corticosteroid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to lipid. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ lipid: 'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids.
+ lipid exposure
+ lipid exposure event
+ exposure to Lipid
+ exposure to lipids
+ exposure to lipid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to carbon monoxide. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ carbon monoxide: A one-carbon compound in which the carbon is joined only to a single oxygen. It is a colourless, odourless, tasteless, toxic gas.
+ MRE:0000099
+ http://www.wikidata.org/entity/Q125367
+ carbon monoxide exposure
+ carbon monoxide exposure event
+ exposure to Carbon monoxide
+ exposure to carbon monooxide
+ exposure to carbon(II) oxide
+
+ exposure to carbon monoxide
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to chemical entity. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ chemical entity: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
+ http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C36290
+ chemical entity exposure
+ chemical entity exposure event
+ exposure to chemical
+
+ exposure to chemical entity
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to steroid hormone. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ steroid hormone: Any steroid that acts as hormone.
+ steroid hormone exposure
+ steroid hormone exposure event
+ exposure to Steroidhormon
+ exposure to Steroidhormone
+ exposure to hormona esteroide
+ exposure to hormonas esteroideas
+ exposure to hormone steroide
+ exposure to hormones steroides
+ exposure to steroid hormones
+ exposure to steroid hormone
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to glucocorticoid. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ glucocorticoid: Glucocorticoids are a class of steroid hormones that regulate a variety of physiological processes, in particular control of the concentration of glucose in blood.
+ glucocorticoid exposure
+ glucocorticoid exposure event
+ exposure to glucocorticoids
+ exposure to glucocorticoid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to oxygen molecular entity. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ oxygen molecular entity exposure
+ oxygen molecular entity exposure event
+ exposure to oxygen molecular entities
+ exposure to oxygen molecular entity
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to formaldehyde. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ formaldehyde: The simplest aldehyde.
+ formaldehyde exposure
+ formaldehyde exposure event
+ exposure to Formaldehyd
+ exposure to Formaldehyde
+ exposure to Formalin
+ exposure to Methanal
+ exposure to Methylene oxide
+ exposure to Oxomethane
+ exposure to Oxomethylene
+ exposure to formaldehyde
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to transition element. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ transition element molecular entity: A molecular entity containing one or more atoms of a transition element.
+ transition element exposure
+ transition element exposure event
+ exposure to transition element molecular entities
+ exposure to transition element molecular entity
+ exposure to transition metal molecular entity
+ exposure to transition element
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a biological role. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ biological role exposure
+ biological role exposure event
+ exposure to biological function
+ exposure to biological role
+ exposure to chemical with biological effect
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a application. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ application exposure
+ application exposure event
+ exposure to application
+ exposure to chemical with application
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a chemical role. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ chemical role exposure
+ chemical role exposure event
+ exposure to chemical role
+ exposure to chemical with chemical role
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a alkylating agent. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ alkylating agent exposure
+ alkylating agent exposure event
+ exposure to alkylating agent
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a drug. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C41362
+ drug exposure
+ drug exposure event
+ exposure to drugs
+ exposure to medicine
+
+ exposure to drug
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a herbicide. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ herbicide exposure
+ herbicide exposure event
+ exposure to Herbizid
+ exposure to Unkrautbekaempfungsmittel
+ exposure to Unkrautvertilgungsmittel
+ exposure to Wildkrautbekaempfungsmittel
+ exposure to herbicides
+ exposure to herbicide
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a hormone. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ hormone exposure
+ hormone exposure event
+ exposure to endocrine
+ exposure to hormones
+ exposure to hormone
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a mitochondrial respiratory-chain inhibitor. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ mitochondrial respiratory-chain inhibitor exposure
+ mitochondrial respiratory-chain inhibitor exposure event
+ exposure to mitochondrial electron transport chain inhibitors
+ exposure to mitochondrial electron-transport chain inhibitor
+ exposure to mitochondrial respiratory chain inhibitors
+ exposure to mitochondrial respiratory-chain inhibitor
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a mutagen. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ mutagen exposure
+ mutagen exposure event
+ exposure to mutagene
+ exposure to mutagenes
+ exposure to mutagenic agent
+ exposure to mutageno
+ exposure to mutagenos
+ exposure to mutagens
+ exposure to mutagen
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a mycotoxin. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ mycotoxin exposure
+ mycotoxin exposure event
+ exposure to fungal toxins
+ exposure to mycotoxins
+ exposure to mycotoxin
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a neurotransmitter. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ neurotransmitter exposure
+ neurotransmitter exposure event
+ exposure to neurotransmitters
+ exposure to neurotransmitter
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a pesticide. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ pesticide exposure
+ pesticide exposure event
+ exposure to Pestizid
+ exposure to Pestizide
+ exposure to pesticides
+ exposure to pesticide
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a toxin. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ toxin exposure
+ toxin exposure event
+ exposure to toxins
+ exposure to toxin
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a molecular messenger. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ molecular messenger exposure
+ molecular messenger exposure event
+ exposure to chemical messenger
+ exposure to molecular messenger
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a antimicrobial agent. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ antimicrobial agent exposure
+ antimicrobial agent exposure event
+ exposure to Antibiotika
+ exposure to Antibiotikum
+ exposure to antibiotic
+ exposure to antibiotics
+ exposure to antibiotique
+ exposure to antimicrobial
+ exposure to antimicrobial agents
+ exposure to antimicrobials
+ exposure to microbicide
+ exposure to microbicides
+ exposure to antimicrobial agent
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a inhibitor. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ inhibitor exposure
+ inhibitor exposure event
+ exposure to inhibidor
+ exposure to inhibiteur
+ exposure to inhibitors
+ exposure to inhibitor
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a vasodilator agent. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ vasodilator agent exposure
+ vasodilator agent exposure event
+ exposure to vasodilator
+ exposure to vasodilator agents
+ exposure to vasodilator agent
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a EC 1.9.3.1 (cytochrome c oxidase) inhibitor. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ EC 1.9.3.1 (cytochrome c oxidase) inhibitor exposure
+ EC 1.9.3.1 (cytochrome c oxidase) inhibitor exposure event
+ exposure to CcO inhibitor
+ exposure to EC 1.9.3.1 (cytochrome c oxidase) inhibitors
+ exposure to EC 1.9.3.1 inhibitor
+ exposure to EC 1.9.3.1 inhibitors
+ exposure to NADH cytochrome c oxidase inhibitor
+ exposure to NADH cytochrome c oxidase inhibitors
+ exposure to Warburg's respiratory enzyme inhibitor
+ exposure to Warburg's respiratory enzyme inhibitors
+ exposure to complex IV (mitochondrial electron transport) inhibitor
+ exposure to complex IV (mitochondrial electron transport) inhibitors
+ exposure to cytochrome a3 inhibitor
+ exposure to cytochrome a3 inhibitors
+ exposure to cytochrome aa3 inhibitor
+ exposure to cytochrome aa3 inhibitors
+ exposure to cytochrome c oxidase (EC 1.9.3.1) inhibitor
+ exposure to cytochrome c oxidase (EC 1.9.3.1) inhibitors
+ exposure to cytochrome c oxidase inhibitor
+ exposure to cytochrome c oxidase inhibitors
+ exposure to cytochrome oxidase inhibitor
+ exposure to cytochrome oxidase inhibitors
+ exposure to cytochrome-c oxidase inhibitor
+ exposure to cytochrome-c oxidase inhibitors
+ exposure to ferrocytochrome c oxidase inhibitor
+ exposure to ferrocytochrome c oxidase inhibitors
+ exposure to ferrocytochrome-c:oxygen oxidoreductase inhibitor
+ exposure to ferrocytochrome-c:oxygen oxidoreductase inhibitors
+ exposure to indophenol oxidase inhibitor
+ exposure to indophenol oxidase inhibitors
+ exposure to indophenolase inhibitor
+ exposure to indophenolase inhibitors
+ exposure to mitochondrial complex IV inhibitor
+ exposure to mitochondrial complex IV inhibitors
+ exposure to mitochondrial cytochrome-c oxidase inhibitors
+ exposure to EC 1.9.3.1 (cytochrome c oxidase) inhibitor
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a Bronsted acid. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ Bronsted acid exposure
+ Bronsted acid exposure event
+ exposure to Bronsted-Saeure
+ exposure to acide de Bronsted
+ exposure to donneur d'hydron
+ exposure to hydron donor
+ exposure to Bronsted acid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a disinfectant. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ disinfectant exposure
+ disinfectant exposure event
+ exposure to Desinfektionsmittel
+ exposure to desinfectant
+ exposure to disinfectants
+ exposure to disinfecting agent
+ exposure to disinfectant
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a agonist. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ agonist exposure
+ agonist exposure event
+ exposure to agonista
+ exposure to agoniste
+ exposure to agonists
+ exposure to agonist
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a P450 inhibitor. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ P450 inhibitor exposure
+ P450 inhibitor exposure event
+ exposure to CYP2D6 inhbitor
+ exposure to CYP2D6 inhbitors
+ exposure to P450 inhibitors
+ exposure to cytochrome P450 inhibitor
+ exposure to cytochrome P450 inhibitors
+ exposure to P450 inhibitor
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a probe. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ probe exposure
+ probe exposure event
+ exposure to probe
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a genotoxin. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ genotoxin exposure
+ genotoxin exposure event
+ exposure to genotoxic agent
+ exposure to genotoxic agents
+ exposure to genotoxins
+ exposure to genotoxin
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a carcinogenic agent. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ carcinogenic agent exposure
+ carcinogenic agent exposure event
+ exposure to agente carcinogeno
+ exposure to cancerigene
+ exposure to cancerogene
+ exposure to carcinogen
+ exposure to carcinogene
+ exposure to carcinogenic agents
+ exposure to carcinogeno
+ exposure to carcinogens
+ exposure to carcinogenic agent
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a allergen. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ allergen exposure
+ allergen exposure event
+ exposure to alergeno
+ exposure to allergene
+ exposure to allergenic agent
+ exposure to allergen
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a neurotoxin. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ neurotoxin exposure
+ neurotoxin exposure event
+ exposure to agente neurotoxico
+ exposure to nerve poison
+ exposure to nerve poisons
+ exposure to neurotoxic agent
+ exposure to neurotoxic agents
+ exposure to neurotoxicant
+ exposure to neurotoxins
+ exposure to neurotoxin
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a ligand. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ ligand exposure
+ ligand exposure event
+ exposure to ligands
+ exposure to ligand
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a biomarker. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ biomarker exposure
+ biomarker exposure event
+ exposure to biological marker
+ exposure to biomarker
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a signalling molecule. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ signalling molecule exposure
+ signalling molecule exposure event
+ exposure to signal molecule
+ exposure to signal molecules
+ exposure to signaling molecule
+ exposure to signaling molecules
+ exposure to signalling molecules
+ exposure to signalling molecule
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a EC 3.5.1.4 (amidase) inhibitor. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ EC 3.5.1.4 (amidase) inhibitor exposure
+ EC 3.5.1.4 (amidase) inhibitor exposure event
+ exposure to EC 3.5.1.4 (amidase) inhibitors
+ exposure to EC 3.5.1.4 inhibitor
+ exposure to EC 3.5.1.4 inhibitors
+ exposure to N-acetylaminohydrolase inhibitor
+ exposure to N-acetylaminohydrolase inhibitors
+ exposure to acylamidase inhibitor
+ exposure to acylamidase inhibitors
+ exposure to acylamide amidohydrolase inhibitor
+ exposure to acylamide amidohydrolase inhibitors
+ exposure to amidase (EC 3.5.1.4) inhibitor
+ exposure to amidase (EC 3.5.1.4) inhibitors
+ exposure to amidase inhibitor
+ exposure to amidase inhibitors
+ exposure to amidohydrolase inhibitor
+ exposure to amidohydrolase inhibitors
+ exposure to deaminase inhibitor
+ exposure to deaminase inhibitors
+ exposure to fatty acylamidase inhibitor
+ exposure to fatty acylamidase inhibitors
+ exposure to EC 3.5.1.4 (amidase) inhibitor
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to a environmental contaminant. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ environmental contaminant exposure
+ environmental contaminant exposure event
+ exposure to environmental contaminants
+ exposure to environmental contaminant
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to the condition of temperature in the surrounding environmental material.
+ environmental material temperature exposure
+ exposure to temperature of environmental material in surroundings
+ exposure to temperature of portion of environmental material in surroundings
+ exposure to temperature of surroundings
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to the condition of temperature in the surrounding air.
+ air temperature exposure
+ exposure to temperature of air in surroundings
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to the condition of decreased temperature in the surrounding air.
+ air decreased temperature exposure
+ exposure to decreased temperature of air in surroundings
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to the condition of decreased temperature in the surrounding environmental material.
+ environmental material decreased temperature exposure
+ exposure to decreased temperature of portion of environmental material in surroundings
+ exposure to decreased temperature of environmental material in surroundings
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to aflatoxin. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ aflatoxin: Any of a group of related and highly toxic secondary metabolites (mycotoxins) whose main structural feature is a fused coumarin-bis(dihydrofuran) ring system and which are produced by strains of the moulds Aspergillus flavus or A. parasiticus, together with further metabolites of these mycotoxins
+ aflatoxin exposure
+ aflatoxin exposure event
+ exposure to aflatoxins
+ exposure to aflatoxin
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to organochlorine compound. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ organochlorine compound: An organochlorine compound is a compound containing at least one carbon-chlorine bond.
+ MRE:0000084
+ organochlorine compound exposure
+ organochlorine compound exposure event
+ exposure to chloroorganic compounds
+ exposure to chlororganische Verbindungen
+ exposure to organochloride compound
+ exposure to organochloride compounds
+ exposure to organochlorine compounds
+
+ exposure to organochlorine compound
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to cadmium. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ cadmium exposure
+ cadmium exposure event
+ exposure to cadmium compounds
+ exposure to cadmium molecular entities
+ exposure to cadmium molecular entity
+ exposure to cadmium
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to mercury. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ mercury exposure
+ mercury exposure event
+ exposure to mercury compounds
+ exposure to mercury molecular entities
+ exposure to mercury molecular entity
+ exposure to mercury
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to chloroacetic acid. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ chloroacetic acid: A chlorocarboxylic acid that is acetic acid carrying a 2-chloro substituent.
+ chloroacetic acid exposure
+ chloroacetic acid exposure event
+ exposure to 2-chloro-acetic acid
+ exposure to 2-chloro-ethanoic acid
+ exposure to 2-chloroacetic acid
+ exposure to Acide chloracetique
+ exposure to Acide chloroacetique
+ exposure to Acide monochloracetique
+ exposure to Chloroacetic acid
+ exposure to Chloroethanoic acid
+ exposure to Monochloressigsaeure
+ exposure to alpha-chloro-acetic acid
+ exposure to chloracetic acid
+ exposure to monochloroacetic acid
+ exposure to monochloroethanoic acid
+ exposure to chloroacetic acid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A exposure event involving the interaction of an exposure receptor to steroid. Exposure may be through a variety of means, including through the air or surrounding medium, or through ingestion.
+ steroid: Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene, so may be considered as triterpenoids.
+ steroid exposure
+ steroid exposure event
+ exposure to Steroid
+ exposure to a steroid
+ exposure to steroids
+ exposure to steroid
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ An interaction between an exposure stressor and an exposure receptor.
+ RO:0002310
+ exposure event or process
+
+
+
+
+ An interaction between an exposure stressor and an exposure receptor.
+ CTD:curators
+
+
+
+
+
+
+
diff --git a/src/ontology/imports/envo_import.obo b/src/ontology/imports/envo_import.obo
index 6ba7ede9be..dfa45311b6 100644
--- a/src/ontology/imports/envo_import.obo
+++ b/src/ontology/imports/envo_import.obo
@@ -1,6 +1,5 @@
format-version: 1.2
ontology: mondo/imports/envo_import
-owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\n\n############################\n# Classes\n############################\n\n# Class: ()\n\n\n# Class: ()\n\n\n# Class: ()\n\n\n# Class: ()\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: ()\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: ()\n\nEquivalentClasses( ObjectIntersectionOf( ObjectComplementOf(ObjectSomeValuesFrom( ))))\n\n# Class: ()\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: ()\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectUnionOf( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))))\nSubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\n\n# Class: ()\n\nEquivalentClasses( ObjectUnionOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))\n\n# Class: ()\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectUnionOf( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( )))\n\n# Class: ()\n\nSubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( )))\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nDisjointClasses( )\n)
[Term]
id: BFO:0000001
@@ -84,6 +83,58 @@ id: CARO:0000006
name: material anatomical entity
is_a: BFO:0000040 ! material entity
+[Term]
+id: CHEBI:15022
+name: electron donor
+is_a: CHEBI:17891 ! donor
+
+[Term]
+id: CHEBI:15377
+name: water
+is_a: CHEBI:33693 ! oxygen hydride
+is_a: CHEBI:37176 ! mononuclear parent hydride
+is_a: CHEBI:52625 ! inorganic hydroxy compound
+
+[Term]
+id: CHEBI:15379
+name: dioxygen
+is_a: CHEBI:25362 ! elemental molecule
+is_a: CHEBI:33263 ! diatomic oxygen
+
+[Term]
+id: CHEBI:16526
+name: carbon dioxide
+is_a: CHEBI:23014 ! carbon oxide
+is_a: CHEBI:64708 ! one-carbon compound
+
+[Term]
+id: CHEBI:17891
+name: donor
+is_a: CHEBI:51086 ! chemical role
+
+[Term]
+id: CHEBI:17997
+name: dinitrogen
+is_a: CHEBI:25362 ! elemental molecule
+is_a: CHEBI:33266 ! diatomic nitrogen
+
+[Term]
+id: CHEBI:23014
+name: carbon oxide
+is_a: CHEBI:25701 ! organic oxide
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:23114
+name: chloride salt
+is_a: CHEBI:23117 ! chlorine molecular entity
+is_a: CHEBI:33958 ! halide salt
+
+[Term]
+id: CHEBI:23117
+name: chlorine molecular entity
+is_a: CHEBI:24471 ! halogen molecular entity
+
[Term]
id: CHEBI:23367
name: molecular entity
@@ -99,11 +150,155 @@ id: CHEBI:24432
name: biological role
is_a: CHEBI:50906 ! role
+[Term]
+id: CHEBI:24471
+name: halogen molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:24651
+name: hydroxides
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:33608 ! hydrogen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:24835
+name: inorganic molecular entity
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:24839
+name: inorganic salt
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:24866 ! salt
+
+[Term]
+id: CHEBI:24866
+name: salt
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:25362
+name: elemental molecule
+is_a: CHEBI:25367 ! molecule
+is_a: CHEBI:33259 ! elemental molecular entity
+
+[Term]
+id: CHEBI:25367
+name: molecule
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:25701
+name: organic oxide
+is_a: CHEBI:25741 ! oxide
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:25741
+name: oxide
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:25806
+name: oxygen molecular entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:26710
+name: sodium chloride
+is_a: CHEBI:36093 ! inorganic chloride
+is_a: CHEBI:38702 ! inorganic sodium salt
+
+[Term]
+id: CHEBI:26712
+name: sodium molecular entity
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
+[Term]
+id: CHEBI:26714
+name: sodium salt
+is_a: CHEBI:26712 ! sodium molecular entity
+is_a: CHEBI:35479 ! alkali metal salt
+
+[Term]
+id: CHEBI:33242
+name: inorganic hydride
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:33692 ! hydrides
+
+[Term]
+id: CHEBI:33250
+name: atom
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:33259
+name: elemental molecular entity
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:33262
+name: elemental oxygen
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:33259 ! elemental molecular entity
+
+[Term]
+id: CHEBI:33263
+name: diatomic oxygen
+is_a: CHEBI:33262 ! elemental oxygen
+
+[Term]
+id: CHEBI:33266
+name: diatomic nitrogen
+is_a: CHEBI:33267 ! elemental nitrogen
+
+[Term]
+id: CHEBI:33267
+name: elemental nitrogen
+is_a: CHEBI:33465 ! elemental pnictogen
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
[Term]
id: CHEBI:33284
name: nutrient
is_a: CHEBI:78295 ! food component
+[Term]
+id: CHEBI:33285
+name: heteroorganic entity
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33296
+name: alkali metal molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33302
+name: pnictogen molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33304
+name: chalcogen molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33465
+name: elemental pnictogen
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:33259 ! elemental molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+
+[Term]
+id: CHEBI:33521
+name: metal atom
+is_a: CHEBI:33250 ! atom
+
[Term]
id: CHEBI:33579
name: main group molecular entity
@@ -114,11 +309,43 @@ id: CHEBI:33582
name: carbon group molecular entity
is_a: CHEBI:33675 ! p-block molecular entity
+[Term]
+id: CHEBI:33583
+name: noble gas molecular entity
+is_a: CHEBI:33579 ! main group molecular entity
+
+[Term]
+id: CHEBI:33608
+name: hydrogen molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33674
+name: s-block molecular entity
+is_a: CHEBI:33579 ! main group molecular entity
+
[Term]
id: CHEBI:33675
name: p-block molecular entity
is_a: CHEBI:33579 ! main group molecular entity
+[Term]
+id: CHEBI:33679
+name: helium molecular entity
+is_a: CHEBI:33583 ! noble gas molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33692
+name: hydrides
+is_a: CHEBI:33608 ! hydrogen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:33693
+name: oxygen hydride
+is_a: CHEBI:36902 ! chalcogen hydride
+
[Term]
id: CHEBI:33694
name: biomacromolecule
@@ -130,6 +357,24 @@ id: CHEBI:33839
name: macromolecule
is_a: CHEBI:36357 ! polyatomic entity
+[Term]
+id: CHEBI:33958
+name: halide salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:37578 ! halide
+
+[Term]
+id: CHEBI:35479
+name: alkali metal salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
+[Term]
+id: CHEBI:36093
+name: inorganic chloride
+is_a: CHEBI:23114 ! chloride salt
+is_a: CHEBI:24839 ! inorganic salt
+
[Term]
id: CHEBI:36342
name: subatomic particle
@@ -140,6 +385,51 @@ id: CHEBI:36357
name: polyatomic entity
is_a: CHEBI:23367 ! molecular entity
+[Term]
+id: CHEBI:36902
+name: chalcogen hydride
+is_a: CHEBI:33242 ! inorganic hydride
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:36908
+name: argon molecular entity
+is_a: CHEBI:33583 ! noble gas molecular entity
+
+[Term]
+id: CHEBI:36962
+name: organochalcogen compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:36963
+name: organooxygen compound
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:36962 ! organochalcogen compound
+
+[Term]
+id: CHEBI:37176
+name: mononuclear parent hydride
+is_a: CHEBI:33692 ! hydrides
+
+[Term]
+id: CHEBI:37577
+name: heteroatomic molecular entity
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:37578
+name: halide
+is_a: CHEBI:24471 ! halogen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:38702
+name: inorganic sodium salt
+is_a: CHEBI:24839 ! inorganic salt
+is_a: CHEBI:26714 ! sodium salt
+
[Term]
id: CHEBI:46662
name: mineral
@@ -154,16 +444,48 @@ is_a: CHEBI:33582 ! carbon group molecular entity
id: CHEBI:50906
name: role
+[Term]
+id: CHEBI:51086
+name: chemical role
+is_a: CHEBI:50906 ! role
+
+[Term]
+id: CHEBI:51143
+name: nitrogen molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+
[Term]
id: CHEBI:52211
name: physiological role
is_a: CHEBI:24432 ! biological role
+[Term]
+id: CHEBI:52625
+name: inorganic hydroxy compound
+is_a: CHEBI:24651 ! hydroxides
+is_a: CHEBI:24835 ! inorganic molecular entity
+
[Term]
id: CHEBI:59999
name: chemical substance
is_a: CHEBI:24431 ! chemical entity
+[Term]
+id: CHEBI:64708
+name: one-carbon compound
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:72695
+name: organic molecule
+is_a: CHEBI:25367 ! molecule
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:76413
+name: greenhouse gas
+is_a: CHEBI:51086 ! chemical role
+
[Term]
id: CHEBI:78295
name: food component
@@ -203,6 +525,26 @@ synonym: "building" EXACT []
is_a: ENVO:00000070 ! construction
relationship: BFO:0000051 ENVO:01000420 ! has part building part
+[Term]
+id: ENVO:00000131
+name: glacial feature
+def: "A hydrographic feature characterized by the dominance of snow or ice." []
+synonym: "glacer" NARROW []
+synonym: "glacial landform" RELATED []
+synonym: "glacier feature" RELATED []
+synonym: "Ice" RELATED []
+synonym: "LandIce" RELATED []
+is_a: ENVO:00002297 ! environmental feature
+
+[Term]
+id: ENVO:00000134
+name: permafrost
+def: "Soil at or below the freezing point of water (0C or 32F) for two or more years. Ice is not always present, as may be in the case of nonporous bedrock, but it frequently occurs and it may be in amounts exceeding the potential hydraulic saturation of the ground material." []
+synonym: "Permafrost" EXACT []
+is_a: ENVO:00001998 ! soil
+is_a: ENVO:01001125 ! ice
+relationship: RO:0000086 PATO:0001985 ! has quality frozen
+
[Term]
id: ENVO:00001995
name: rock
@@ -231,6 +573,26 @@ name: mesoscopic physical object
def: "An environmental feature that is, or can be, contained and is predominantly composed of one or a few types of stuff." []
is_a: ENVO:00002297 ! environmental feature
+[Term]
+id: ENVO:00002005
+name: air
+def: "The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth." []
+is_a: ENVO:01000797 ! gaseous environmental material
+relationship: BFO:0000051 CHEBI:15379 ! has part dioxygen
+relationship: BFO:0000051 CHEBI:16526 ! has part carbon dioxide
+relationship: BFO:0000051 CHEBI:36908 ! has part argon molecular entity
+relationship: BFO:0000051 ENVO:01000266 ! has part water vapour
+relationship: RO:0000086 PATO:0001547 ! has quality quality of a gas
+relationship: RO:0002473 CHEBI:17997 ! composed primarily of dinitrogen
+
+[Term]
+id: ENVO:00002006
+name: water
+def: "An environmental material primarily composed of dihydrogen oxide in its liquid form." []
+is_a: ENVO:01000815 ! liquid environmental material
+relationship: RO:0000086 PATO:0001548 ! has quality quality of a liquid
+relationship: RO:0002473 CHEBI:15377 ! composed primarily of water
+
[Term]
id: ENVO:00002008
name: dust
@@ -299,6 +661,15 @@ id: ENVO:00003075
name: anthropogenic abiotic mesoscopic feature
is_a: ENVO:01000010 ! abiotic mesoscopic physical object
+[Term]
+id: ENVO:00003082
+name: enriched soil
+def: "A portion of enriched soil is a portion of soil with elevated levels of some material entity." []
+is_a: ENVO:00001998 ! soil
+intersection_of: ENVO:00001998 ! soil
+intersection_of: has_increased_levels_of BFO:0000040 ! material entity
+relationship: has_increased_levels_of BFO:0000040 ! material entity
+
[Term]
id: ENVO:00010483
name: environmental material
@@ -306,6 +677,13 @@ def: "A portion of environmental material is a fiat object which forms the mediu
synonym: "portion of environmental material" EXACT []
is_a: BFO:0000040 ! material entity
+[Term]
+id: ENVO:00010505
+name: aerosol
+def: "Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets." []
+is_a: ENVO:01000060 ! particulate matter
+relationship: RO:0002219 ENVO:00002005 ! surrounded by air
+
[Term]
id: ENVO:0010001
name: anthropogenic environmental material
@@ -338,6 +716,12 @@ def: "A naturally occurring granular material composed of finely divided rock an
is_a: ENVO:00010483 ! environmental material
relationship: RO:0001000 ENVO:00001995 ! derives from rock
+[Term]
+id: ENVO:01000060
+name: particulate matter
+def: "Particulate material is an environmental material which is composed of microscopic portions of solid or liquid material suspended in another environmental material." []
+is_a: ENVO:00010483 ! environmental material
+
[Term]
id: ENVO:01000155
name: organic material
@@ -363,6 +747,49 @@ intersection_of: RO:0002473 CHEBI:46662 ! composed primarily of mineral
relationship: RO:0000086 PATO:0001546 ! has quality quality of a solid
relationship: RO:0002473 CHEBI:46662 ! composed primarily of mineral
+[Term]
+id: ENVO:01000266
+name: water vapour
+def: "Water vapour is a vapour which is the gas phase of water." []
+synonym: "aqueous vapor" EXACT []
+synonym: "aqueous vapour" EXACT []
+synonym: "water vapor" EXACT []
+is_a: ENVO:01000797 ! gaseous environmental material
+relationship: RO:0000086 PATO:0001547 ! has quality quality of a gas
+relationship: RO:0002473 CHEBI:15377 ! composed primarily of water
+
+[Term]
+id: ENVO:01000267
+name: atmosphere
+def: "An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body." []
+is_a: ENVO:01000281 ! layer
+
+[Term]
+id: ENVO:01000268
+name: atmospheric water vapour
+def: "Atmospheric water vapour is water vapour that is part of an atmosphere." []
+synonym: "atmospheric water vapor" EXACT []
+is_a: ENVO:01000266 ! water vapour
+intersection_of: ENVO:01000266 ! water vapour
+intersection_of: BFO:0000050 ENVO:01000267 ! part of atmosphere
+relationship: BFO:0000050 ENVO:01000267 ! part of atmosphere
+relationship: RO:0000087 CHEBI:76413 ! has role greenhouse gas
+
+[Term]
+id: ENVO:01000277
+name: water ice
+def: "Ice is water frozen into a solid state. It can appear transparent or opaque bluish-white color, depending on the presence of impurities or air inclusions. The addition of other materials such as soil may further alter its appearance." []
+synonym: "ice" RELATED []
+is_a: ENVO:01001125 ! ice
+relationship: RO:0002473 ENVO:00002006 ! composed primarily of water
+
+[Term]
+id: ENVO:01000281
+name: layer
+def: "A layer is a quantity of some material which has comparable thickness and usually covers some surface." []
+is_a: ENVO:00000000 ! geographic feature
+relationship: RO:0000086 PATO:0002124 ! has quality laminar
+
[Term]
id: ENVO:01000303
name: endolithic environment
@@ -372,12 +799,61 @@ intersection_of: ENVO:01000254 ! environmental system
intersection_of: RO:0002219 ENVO:00001995 ! surrounded by rock
relationship: RO:0002219 ENVO:00001995 ! surrounded by rock
+[Term]
+id: ENVO:01000305
+name: high temperature environment
+def: "A high temperature environment is an environment in which material entities are exposed to increased levels of heat radiation or which have molecules or atoms moving randomly with increased levels of average kinietic energy." []
+is_a: ENVO:01000997 ! environmental system determined by a quality
+intersection_of: ENVO:01000997 ! environmental system determined by a quality
+intersection_of: RO:0000086 PATO:0001305 ! has quality increased temperature
+relationship: RO:0000086 PATO:0001305 ! has quality increased temperature
+
[Term]
id: ENVO:01000313
name: anthropogenic environment
def: "An anthropogenic environment is an environmental system which is the product of human activity." []
is_a: ENVO:01000254 ! environmental system
+[Term]
+id: ENVO:01000314
+name: high osmolarity environment
+def: "A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes." []
+is_a: ENVO:01000997 ! environmental system determined by a quality
+intersection_of: ENVO:01000997 ! environmental system determined by a quality
+intersection_of: RO:0000086 PATO:0001657 ! has quality increased osmolarity
+relationship: RO:0000086 PATO:0001657 ! has quality increased osmolarity
+
+[Term]
+id: ENVO:01000317
+name: aquatic environment
+def: "An environment whose dynamics are strongly influenced by water." []
+is_a: ENVO:01000997 ! environmental system determined by a quality
+is_a: ENVO:01000998 ! environmental system determined by a material
+intersection_of: ENVO:01000254 ! environmental system
+intersection_of: RO:0002507 ENVO:00002006 ! determined by water
+relationship: RO:0002507 ENVO:00002006 ! determined by water
+
+[Term]
+id: ENVO:01000325
+name: aquatic layer
+def: "A layer in a water mass, itself composed primarily of water." []
+is_a: ENVO:01000281 ! layer
+intersection_of: ENVO:01000281 ! layer
+intersection_of: RO:0002473 ENVO:00002006 ! composed primarily of water
+relationship: RO:0002473 ENVO:00002006 ! composed primarily of water
+
+[Term]
+id: ENVO:01000406
+name: snow
+def: "Snow is an environmental material which is primarily composed of flakes of crystalline water ice." []
+synonym: "snow" RELATED []
+is_a: ENVO:00000131 ! glacial feature
+is_a: ENVO:00010483 ! environmental material
+is_a: ENVO:03000110 ! cryoform
+relationship: BFO:0000051 ENVO:00002005 ! has part air
+relationship: RO:0002353 ENVO:01000703 ! output of hydrological precipitation process
+relationship: RO:0002473 ENVO:01000277 ! composed primarily of water ice
+
[Term]
id: ENVO:01000420
name: building part
@@ -385,6 +861,16 @@ def: "A building part is a construction which is part of a building." []
is_a: ENVO:00000070 ! construction
relationship: BFO:0000050 ENVO:00000073 ! part of building
+[Term]
+id: ENVO:01000624
+name: hydrological condensation process
+def: "Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase." []
+synonym: "condensation" BROAD []
+is_a: ENVO:01000724 ! condensation process
+is_a: ENVO:02500031 ! hydrological process
+relationship: RO:0002233 ENVO:01000268 ! has input atmospheric water vapour
+relationship: RO:0002234 ENVO:00002006 ! has output water
+
[Term]
id: ENVO:01000637
name: outer space
@@ -392,12 +878,58 @@ def: "Outer space is a hard vacuum containing a low density of particles, predom
synonym: "space" BROAD []
is_a: ENVO:00002297 ! environmental feature
+[Term]
+id: ENVO:01000639
+name: planetary structural layer
+def: "A planetary structural layer is laminar part of a terrestrial planet or other rocky body large enough to have differentiation by density. Planetary layers have differing physicochemical properties and composition." []
+is_a: ENVO:01000281 ! layer
+relationship: BFO:0000050 ENVO:01000800 ! part of planet
+
+[Term]
+id: ENVO:01000648
+name: magma
+def: "Magma is a mixture of molten or semi-molten rock, volatiles, and solids that is found beneath the uppermost solid layer of a planetary body. Besides molten rock, magma may also contain suspended crystals, dissolved gas and sometimes gas bubbles." []
+is_a: ENVO:00010483 ! environmental material
+relationship: RO:0000086 PATO:0001305 ! has quality increased temperature
+relationship: RO:0001025 ENVO:01000639 ! located in planetary structural layer
+
[Term]
id: ENVO:01000665
name: waste role
def: "A role that is realized in some process wherein the bearer is discarded or not utilized further." []
is_a: BFO:0000023 ! role
+[Term]
+id: ENVO:01000703
+name: hydrological precipitation process
+def: "Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity." []
+synonym: "precipitation" BROAD []
+is_a: ENVO:01000875 ! precipitation process
+
+[Term]
+id: ENVO:01000724
+name: condensation process
+def: "Condensation is a process during which a gas undergoes a phase transition into a liquid." []
+is_a: ENVO:03000043 ! material transformation process
+
+[Term]
+id: ENVO:01000755
+name: aeroform
+def: "An aeroform is a geographic feature which is primarily composed of a continuous volume of gaseous or aerosolised material held in shape by one or more environmental processes." []
+is_a: ENVO:00000000 ! geographic feature
+is_a: ENVO:01001008 ! meteor
+relationship: RO:0001025 ENVO:01000267 ! located in atmosphere
+
+[Term]
+id: ENVO:01000797
+name: gaseous environmental material
+def: "A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely." []
+synonym: "gas" NARROW []
+is_a: ENVO:00010483 ! environmental material
+intersection_of: ENVO:00010483 ! environmental material
+intersection_of: RO:0000086 PATO:0001547 ! has quality quality of a gas
+relationship: RO:0000086 PATO:0001547 ! has quality quality of a gas
+
[Term]
id: ENVO:01000799
name: astronomical body
@@ -405,6 +937,12 @@ def: "An object which is naturally occuring, bound together by gravitational or
synonym: "celestial body" RELATED []
is_a: ENVO:01000804 ! astronomical object
+[Term]
+id: ENVO:01000800
+name: planet
+def: "A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals." []
+is_a: ENVO:01000799 ! astronomical body
+
[Term]
id: ENVO:01000804
name: astronomical object
@@ -430,6 +968,15 @@ intersection_of: ENVO:00010483 ! environmental material
intersection_of: RO:0000086 PATO:0001546 ! has quality quality of a solid
relationship: RO:0000086 PATO:0001546 ! has quality quality of a solid
+[Term]
+id: ENVO:01000815
+name: liquid environmental material
+def: "An environmental material which is in a liquid state." []
+is_a: ENVO:01000648 ! magma
+intersection_of: ENVO:00010483 ! environmental material
+intersection_of: RO:0000086 PATO:0001548 ! has quality quality of a liquid
+relationship: RO:0000086 PATO:0001548 ! has quality quality of a liquid
+
[Term]
id: ENVO:01000817
name: biosphere
@@ -438,6 +985,12 @@ is_a: ENVO:01000813 ! astronomical body part
is_a: ENVO:01001110 ! ecosystem
relationship: BFO:0000051 PCO:0000000 ! has part collection of organisms
+[Term]
+id: ENVO:01000875
+name: precipitation process
+def: "A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force." []
+is_a: ENVO:03000010 ! material transport process
+
[Term]
id: ENVO:01000951
name: natural environment
@@ -456,6 +1009,15 @@ intersection_of: RO:0002234 ENVO:01000313 ! has output anthropogenic environment
relationship: RO:0002233 ENVO:01000951 ! has input natural environment
relationship: RO:0002234 ENVO:01000313 ! has output anthropogenic environment
+[Term]
+id: ENVO:01000958
+name: terrestrial planet
+def: "A planet that is composed primarily of silicate rocks or metals." []
+synonym: "Earth-like planet" RELATED []
+synonym: "rocky planet" EXACT []
+synonym: "telluric planet" EXACT []
+is_a: ENVO:01000800 ! planet
+
[Term]
id: ENVO:01000983
name: technosphere
@@ -519,6 +1081,34 @@ intersection_of: ENVO:01000254 ! environmental system
intersection_of: RO:0002507 NCBITaxon:33208 ! determined by Metazoa
relationship: RO:0002507 NCBITaxon:33208 ! determined by Metazoa
+[Term]
+id: ENVO:01001008
+name: meteor
+def: "A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body." []
+is_a: BFO:0000040 ! material entity
+intersection_of: BFO:0000004 ! independent continuant
+intersection_of: RO:0001025 ENVO:01000267 ! located in atmosphere
+relationship: RO:0001025 ENVO:01000267 ! located in atmosphere
+
+[Term]
+id: ENVO:01001010
+name: hydrometeor
+def: "A meteor which is primarily composed of water." []
+is_a: ENVO:01001008 ! meteor
+intersection_of: ENVO:01001008 ! meteor
+intersection_of: RO:0002473 ENVO:00002006 ! composed primarily of water
+relationship: RO:0002473 ENVO:00002006 ! composed primarily of water
+
+[Term]
+id: ENVO:01001012
+name: lithometeor
+def: "A meteor which is primarily composed of rock." []
+is_a: ENVO:01001008 ! meteor
+intersection_of: ENVO:01001008 ! meteor
+intersection_of: RO:0002473 ENVO:00001995 ! composed primarily of rock
+relationship: RO:0001000 ENVO:01001068 ! derives from meteoroid
+relationship: RO:0002473 ENVO:00001995 ! composed primarily of rock
+
[Term]
id: ENVO:01001023
name: radiation
@@ -533,6 +1123,14 @@ name: electromagnetic radiation
def: "A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy." []
is_a: ENVO:01001023 ! radiation
+[Term]
+id: ENVO:01001040
+name: saline environment
+def: "An environment which is determined by materials which bear significant concentrations of salts." []
+is_a: ENVO:01000314 ! high osmolarity environment
+is_a: ENVO:01000998 ! environmental system determined by a material
+relationship: RO:0000086 PATO:0001657 ! has quality increased osmolarity
+
[Term]
id: ENVO:01001044
name: soil environment
@@ -543,6 +1141,28 @@ intersection_of: ENVO:01000254 ! environmental system
intersection_of: RO:0002507 ENVO:00001998 ! determined by soil
relationship: RO:0002507 ENVO:00001998 ! determined by soil
+[Term]
+id: ENVO:01001052
+name: aerosol environment
+def: "An environmental system which has its properties and dynamics determined by an aerosol." []
+is_a: ENVO:01000998 ! environmental system determined by a material
+intersection_of: ENVO:01000254 ! environmental system
+intersection_of: RO:0002507 ENVO:00010505 ! determined by aerosol
+relationship: RO:0002507 ENVO:00010505 ! determined by aerosol
+
+[Term]
+id: ENVO:01001053
+name: saline aerosol environment
+def: "An environmental system which has its properties and dynamics determined by a saline aerosol." []
+is_a: ENVO:01001040 ! saline environment
+is_a: ENVO:01001052 ! aerosol environment
+
+[Term]
+id: ENVO:01001054
+name: non-saline aerosol environment
+def: "An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes." []
+is_a: ENVO:01001052 ! aerosol environment
+
[Term]
id: ENVO:01001055
name: environment associated with an animal part or small animal
@@ -558,18 +1178,84 @@ name: environment associated with a plant part or small plant
def: "An environmental system determined by part of a living or dead plant, or a whole small plant." []
is_a: ENVO:01000254 ! environmental system
+[Term]
+id: ENVO:01001068
+name: meteoroid
+def: "An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids." []
+is_a: ENVO:01000799 ! astronomical body
+relationship: RO:0000086 PATO:0000587 ! has quality decreased size
+
+[Term]
+id: ENVO:01001069
+name: metallic material
+def: "A material which is composed primarily of one or more pure metals and which shows their properties." []
+synonym: "metal" RELATED []
+is_a: ENVO:00010483 ! environmental material
+relationship: RO:0000086 PATO:0000963 ! has quality opaque
+relationship: RO:0000087 CHEBI:15022 ! has role electron donor
+relationship: RO:0002473 CHEBI:33521 ! composed primarily of metal atom
+
+[Term]
+id: ENVO:01001088
+name: liquid aerosol
+def: "An aerosol which is primarily composed of liquid droplets." []
+is_a: ENVO:00010505 ! aerosol
+is_a: ENVO:01000815 ! liquid environmental material
+intersection_of: ENVO:00010505 ! aerosol
+intersection_of: RO:0000086 PATO:0001548 ! has quality quality of a liquid
+relationship: RO:0000086 PATO:0001548 ! has quality quality of a liquid
+relationship: RO:0002219 ENVO:00002005 ! surrounded by air
+
+[Term]
+id: ENVO:01001089
+name: solid aerosol
+def: "An aerosol which is primarily composed of solid particles." []
+is_a: ENVO:00010505 ! aerosol
+is_a: ENVO:01000814 ! solid environmental material
+intersection_of: ENVO:00010505 ! aerosol
+intersection_of: RO:0000086 PATO:0001546 ! has quality quality of a solid
+relationship: RO:0000086 PATO:0001546 ! has quality quality of a solid
+relationship: RO:0002219 ENVO:00002005 ! surrounded by air
+
[Term]
id: ENVO:01001110
name: ecosystem
def: "An environmental system which includes both living and non-living components." []
is_a: ENVO:01000254 ! environmental system
+[Term]
+id: ENVO:01001122
+name: gas planet
+def: "A planet which is primarily composed of hydrogen and helium." []
+is_a: ENVO:01000800 ! planet
+relationship: RO:0002473 ENVO:01001155 ! composed primarily of astrogeological gas
+
[Term]
id: ENVO:01001125
name: ice
def: "An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure." []
is_a: ENVO:00010483 ! environmental material
+[Term]
+id: ENVO:01001147
+name: helium planet
+def: "A gas planet which has an atmosphere composed primarily of helium." []
+is_a: ENVO:01001122 ! gas planet
+
+[Term]
+id: ENVO:01001154
+name: volatile astrogeological material
+def: "A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet." []
+synonym: "volatile" RELATED []
+is_a: ENVO:00010483 ! environmental material
+
+[Term]
+id: ENVO:01001155
+name: astrogeological gas
+def: "An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium." []
+synonym: "gas" RELATED []
+is_a: ENVO:01001154 ! volatile astrogeological material
+
[Term]
id: ENVO:02000091
name: coal
@@ -598,6 +1284,15 @@ id: ENVO:02000101
name: fibrous dust
is_a: ENVO:00002008 ! dust
+[Term]
+id: ENVO:02000103
+name: metallic dust
+is_a: ENVO:00002008 ! dust
+intersection_of: ENVO:00002008 ! dust
+intersection_of: RO:0001000 ENVO:01001069 ! derives from metallic material
+relationship: RO:0001000 ENVO:01001069 ! derives from metallic material
+relationship: RO:0002473 ENVO:01001069 ! composed primarily of metallic material
+
[Term]
id: ENVO:02000105
name: clay dust
@@ -639,6 +1334,29 @@ intersection_of: ENVO:02500000 ! environmental system process
intersection_of: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens
relationship: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens
+[Term]
+id: ENVO:02500031
+name: hydrological process
+is_a: ENVO:02500000 ! environmental system process
+
+[Term]
+id: ENVO:03000010
+name: material transport process
+def: "A process during which material is displaced from it's original location and transported either to a new location or back to the original location." []
+is_a: ENVO:02500000 ! environmental system process
+
+[Term]
+id: ENVO:03000043
+name: material transformation process
+def: "A process during which a portion of some environmental material is converted into a different material or a collection of materials." []
+is_a: ENVO:02500000 ! environmental system process
+
+[Term]
+id: ENVO:03000110
+name: cryoform
+def: "A geographic feature which is primarily composed of a continuous mass of snow and/or ice." []
+is_a: ENVO:00000000 ! geographic feature
+
[Term]
id: ENVO:09200000
name: temperature of environmental material
@@ -649,6 +1367,16 @@ intersection_of: PATO:0000146 ! temperature
intersection_of: RO:0000052 ENVO:00010483 ! inheres in environmental material
relationship: RO:0000052 ENVO:00010483 ! inheres in environmental material
+[Term]
+id: ENVO:09200001
+name: temperature of air
+def: "The temperature of some air." []
+synonym: "air temperature" EXACT []
+is_a: ENVO:09200000 ! temperature of environmental material
+intersection_of: PATO:0000146 ! temperature
+intersection_of: RO:0000052 ENVO:00002005 ! inheres in air
+relationship: RO:0000052 ENVO:00002005 ! inheres in air
+
[Term]
id: ENVO:09200004
name: porosity of soil
@@ -691,6 +1419,16 @@ intersection_of: PATO:0000146 ! temperature
intersection_of: RO:0000052 ENVO:00001998 ! inheres in soil
relationship: RO:0000052 ENVO:00001998 ! inheres in soil
+[Term]
+id: ENVO:09200014
+name: temperature of water
+def: "The temperature of some water." []
+synonym: "water temperature" EXACT []
+is_a: ENVO:09200000 ! temperature of environmental material
+intersection_of: PATO:0000146 ! temperature
+intersection_of: RO:0000052 ENVO:00002006 ! inheres in water
+relationship: RO:0000052 ENVO:00002006 ! inheres in water
+
[Term]
id: GO:0008150
name: biological_process
@@ -924,6 +1662,13 @@ synonym: "content" EXACT []
synonym: "structure, composition" EXACT []
is_a: PATO:0000141 ! structure
+[Term]
+id: PATO:0000033
+name: concentration of
+def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." []
+synonym: "concentration" EXACT []
+is_a: PATO:0002182 ! molecular quality
+
[Term]
id: PATO:0000048
name: hardness
@@ -992,6 +1737,21 @@ synonym: "underdeveloped" NARROW []
is_a: PATO:0000117 ! size
is_a: PATO:0002303 ! decreased object quality
+[Term]
+id: PATO:0000957
+name: opacity
+def: "An optical quality which obtains by virtue of the ability of the bearer to absorb visible light." []
+is_a: PATO:0001300 ! optical quality
+
+[Term]
+id: PATO:0000963
+name: opaque
+def: "A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy." []
+synonym: "clouding" RELATED []
+synonym: "cloudy" RELATED []
+synonym: "non-transparent" EXACT []
+is_a: PATO:0000957 ! opacity
+
[Term]
id: PATO:0000970
name: permeability
@@ -1031,6 +1791,27 @@ synonym: "quality of an object" EXACT []
synonym: "quality of continuant" EXACT []
is_a: PATO:0000001 ! quality
+[Term]
+id: PATO:0001291
+name: electromagnetic (EM) radiation quality
+def: "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." []
+is_a: PATO:0001739 ! radiation quality
+
+[Term]
+id: PATO:0001300
+name: optical quality
+def: "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." []
+is_a: PATO:0001291 ! electromagnetic (EM) radiation quality
+
+[Term]
+id: PATO:0001305
+name: increased temperature
+def: "A temperature which is relatively high." []
+synonym: "high temperature" EXACT []
+synonym: "hot" EXACT []
+is_a: PATO:0000146 ! temperature
+is_a: PATO:0002305 ! increased object quality
+
[Term]
id: PATO:0001546
name: quality of a solid
@@ -1038,6 +1819,40 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiti
synonym: "solidity" EXACT []
is_a: PATO:0002198 ! quality of a substance
+[Term]
+id: PATO:0001547
+name: quality of a gas
+def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape." []
+synonym: "gaseous" EXACT []
+is_a: PATO:0002198 ! quality of a substance
+
+[Term]
+id: PATO:0001548
+name: quality of a liquid
+def: "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape." []
+synonym: "liquidity" EXACT []
+is_a: PATO:0002198 ! quality of a substance
+
+[Term]
+id: PATO:0001655
+name: osmolarity
+def: "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution." []
+is_a: PATO:0000033 ! concentration of
+
+[Term]
+id: PATO:0001657
+name: increased osmolarity
+def: "A osmolarity which is relatively high." []
+synonym: "high osmolarity" EXACT []
+is_a: PATO:0001655 ! osmolarity
+is_a: PATO:0002305 ! increased object quality
+
+[Term]
+id: PATO:0001739
+name: radiation quality
+def: "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." []
+is_a: PATO:0001018 ! physical quality
+
[Term]
id: PATO:0001759
name: granular
@@ -1050,6 +1865,19 @@ name: frozen
def: "A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point." []
is_a: PATO:0000146 ! temperature
+[Term]
+id: PATO:0002124
+name: laminar
+def: "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer." []
+is_a: PATO:0000141 ! structure
+
+[Term]
+id: PATO:0002182
+name: molecular quality
+def: "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." []
+synonym: "relational molecular quality" EXACT []
+is_a: PATO:0001241 ! physical object quality
+
[Term]
id: PATO:0002198
name: quality of a substance
@@ -1242,6 +2070,31 @@ id: RO:0001001
name: derives into
def: "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity" []
+[Typedef]
+id: RO:0001015
+name: location of
+def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" []
+is_transitive: true
+inverse_of: RO:0001025 ! located in
+
+[Typedef]
+id: RO:0001018
+name: contained in
+domain: BFO:0000040 ! material entity
+range: BFO:0000004 ! independent continuant
+holds_over_chain: RO:0001025 BFO:0000050
+inverse_of: RO:0001019 ! contains
+
+[Typedef]
+id: RO:0001019
+name: contains
+
+[Typedef]
+id: RO:0001025
+name: located in
+def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" []
+is_transitive: true
+
[Typedef]
id: RO:0002131
name: overlaps
@@ -1359,6 +2212,12 @@ id: RO:0002354
name: formed as result of
is_a: RO:0002353 ! output of
+[Typedef]
+id: RO:0002379
+name: spatially coextensive with
+def: "x spatially_coextensive_with y if and inly if x and y have the same location" []
+is_a: RO:0002131 ! overlaps
+
[Typedef]
id: RO:0002410
name: causally related to
diff --git a/src/ontology/imports/envo_import.owl b/src/ontology/imports/envo_import.owl
index 7f816f5734..eecea74283 100644
--- a/src/ontology/imports/envo_import.owl
+++ b/src/ontology/imports/envo_import.owl
@@ -199,6 +199,50 @@
+
+
+
+
+
+ a relation between two independent continuants, the location and the target, in which the target is entirely within the location
+ location of
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ contained in
+
+
+
+
+
+
+
+ contains
+
+
+
+
+
+
+
+
+ a relation between two independent continuants, the target and the location, in which the target is entirely within the location
+ located in
+
+
+
+
@@ -409,6 +453,22 @@
+
+
+
+
+
+
+
+
+
+
+ x spatially_coextensive_with y if and inly if x and y have the same location
+ spatially coextensive with
+
+
+
+
@@ -600,6 +660,12 @@
+
+
+
+
+
+
+
+
+
+ electron donor
+
+
+
+
+
+
+
+
+
+
+ water
+
+
+
+
+
+
+
+
+
+ dioxygen
+
+
+
+
+
+
+
+
+
+ carbon dioxide
+
+
+
+
+
+
+
+
+ donor
+
+
+
+
+
+
+
+
+
+ dinitrogen
+
+
+
+
+
+
+
+
+
+ carbon oxide
+
+
+
+
+
+
+
+
+
+ chloride salt
+
+
+
+
+
+
+
+
+ chlorine molecular entity
+
+
+
+
@@ -771,663 +925,1614 @@
-
+
-
-
- nutrient
+
+
+ halogen molecular entity
-
+
-
+
+
+
+
+ hydroxides
+
+
+
+
+
+
+
- main group molecular entity
+ inorganic molecular entity
-
+
-
-
- carbon group molecular entity
+
+
+
+ inorganic salt
-
+
-
-
- p-block molecular entity
+
+
+ salt
-
+
-
-
-
- biomacromolecule
+
+