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Merge pull request #4072 from monarch-initiative/release_2021-12-01
release_2021-12-01
2 parents 58d98c1 + 18a31d5 commit 9160ad9

12 files changed

+2700
-5484
lines changed

‎src/ontology/components/mondo-tags.owl‎

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@@ -7854,14 +7854,6 @@
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<!-- http://purl.obolibrary.org/obo/MONDO_0002678 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0002678">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0002679 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0002679">
@@ -14451,7 +14443,6 @@
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<!-- http://purl.obolibrary.org/obo/MONDO_0004545 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0004545">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/adult.yaml"/>
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</owl:Class>
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@@ -16710,7 +16701,6 @@
1671016701
<!-- http://purl.obolibrary.org/obo/MONDO_0005336 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005336">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/specific_disease_by_dysfunctional_structure.yaml"/>
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</owl:Class>
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@@ -18674,14 +18664,6 @@
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<!-- http://purl.obolibrary.org/obo/MONDO_0006018 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0006018">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0006019 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0006019">
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<!-- http://purl.obolibrary.org/obo/MONDO_0007140 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0007140">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/mondo/qc-omim-subsumption.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0007142 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0007142">
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<!-- http://purl.obolibrary.org/obo/MONDO_0008641 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0008641">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0008647 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0008647">
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<!-- http://purl.obolibrary.org/obo/MONDO_0008890 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0008890">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/mondo/qc-omim-subsumption.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0008891 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0008891">
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<!-- http://purl.obolibrary.org/obo/MONDO_0009683 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0009683">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/specific_disease_by_dysfunctional_structure.yaml"/>
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</owl:Class>
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@@ -25562,14 +25518,6 @@
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<!-- http://purl.obolibrary.org/obo/MONDO_0009717 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0009717">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0009719 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0009719">
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<!-- http://purl.obolibrary.org/obo/MONDO_0010535 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0010535">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0010539 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0010539">
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<!-- http://purl.obolibrary.org/obo/MONDO_0010922 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0010922">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0010924 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0010924">
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<!-- http://purl.obolibrary.org/obo/MONDO_0011028 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0011028">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/specific_disease_by_dysfunctional_structure.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0011170 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0011170">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/specific_disease_by_dysfunctional_structure.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0011430 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0011430">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/mondo/qc-omim-subsumption.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0011436 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0011436">
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<!-- http://purl.obolibrary.org/obo/MONDO_0011846 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0011846">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0011852 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0011852">
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<!-- http://purl.obolibrary.org/obo/MONDO_0012508 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0012508">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0012509 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0012509">
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<!-- http://purl.obolibrary.org/obo/MONDO_0016212 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0016212">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/infectious_disease_by_agent.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0017648 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0017648">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0017667">
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<!-- http://purl.obolibrary.org/obo/MONDO_0019879 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0019879">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0023143 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0023143">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0023880 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0023880">
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<mondo:should_conform_to rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/OMIM_phenotypic_series.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0023910 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0023910">
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<mondo:should_conform_to rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/OMIM_phenotypic_series.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0023961 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0023961">
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<mondo:should_conform_to rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/OMIM_phenotypic_series.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0024182 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0024182">
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<!-- http://purl.obolibrary.org/obo/MONDO_0024189 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0024189">
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<mondo:should_conform_to rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/OMIM_phenotypic_series.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0024193 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0024193">
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<mondo:should_conform_to rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/OMIM_phenotypic_series.yaml"/>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/MONDO_0024237 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0024237">
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<!-- http://purl.obolibrary.org/obo/MONDO_0043555 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0043555">
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<mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
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<terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/infantile.yaml"/>
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</owl:Class>
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‎src/ontology/debug_inference_check.owl‎

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@@ -661,6 +661,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
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<obo:IAO_0000118 xml:lang="en">has_quality</obo:IAO_0000118>
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<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
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<rdfs:label xml:lang="en">has quality</rdfs:label>
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<rdfs:label>has_quality</rdfs:label>
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</ObjectProperty>
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@@ -1071,6 +1072,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
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<obo:IAO_0000115>q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.</obo:IAO_0000115>
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<obo:IAO_0000115>q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.</obo:IAO_0000115>
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<rdfs:label xml:lang="en">characteristic of part of</rdfs:label>
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<rdfs:label>inheres in part -of</rdfs:label>
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<rdfs:label>inheres in part of</rdfs:label>
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<rdfs:label xml:lang="en">inheres in part of</rdfs:label>
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</ObjectProperty>
@@ -2750,13 +2752,41 @@ For example, A and B may be gene products and binding of B by A positively regul
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<!-- http://purl.obolibrary.org/obo/IAO_0000015 -->
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<Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000015">
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<equivalentClass>
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<Class>
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<intersectionOf rdf:parseType="Collection">
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<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
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<Restriction>
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<onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
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<someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
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</Restriction>
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</intersectionOf>
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</Class>
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</equivalentClass>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
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<rdfs:subClassOf>
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<Restriction>
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<onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
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<someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
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</Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115 xml:lang="en">A quality of an information bearer that imparts the information content</obo:IAO_0000115>
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<rdfs:label xml:lang="en">information carrier</rdfs:label>
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</Class>
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<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
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<Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
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<obo:IAO_0000111 xml:lang="en">data item</obo:IAO_0000111>
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<obo:IAO_0000115 xml:lang="en">An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.</obo:IAO_0000115>
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<obo:IAO_0000115 xml:lang="en">a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.</obo:IAO_0000115>
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<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
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<rdfs:label xml:lang="en">data item</rdfs:label>
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</Class>
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@@ -2774,6 +2804,7 @@ For example, A and B may be gene products and binding of B by A positively regul
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</rdfs:subClassOf>
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<obo:IAO_0000111 xml:lang="en">information content entity</obo:IAO_0000111>
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<obo:IAO_0000115 xml:lang="en">A generically dependent continuant that is about some thing.</obo:IAO_0000115>
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<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
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<rdfs:label xml:lang="en">information content entity</rdfs:label>
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</Class>
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