Another core dump error on import

[skellyfalke]

Hi,

I'm trying to import a vcf file tmp_subset.vcf.gz and getting the following error:

$ tomahawk import -i out/tmp_subset.vcf -o tmp/test.twk
Program: tomahawk-beta-0.7.1-dirty (Tools for computing, querying and storing LD data)
Libraries: tomahawk-0.7.0; ZSTD-1.5.6; htslib 1.13+ds
Contact: Marcus D. R. Klarqvist [email protected]
Documentation: https://github.com/mklarqvist/tomahawk
License: MIT

[2024-05-29 10:33:41,791][LOG] Calling import...
[2024-05-29 10:33:41,792][LOG][READER] Opening out/tmp_subset.vcf...
Segmentation fault (core dumped)

The VCF file format looks OK to me so I began trying to use gdb to diagnose the problem:

$ gdb --args tomahawk import -i out/tmp_subset.vcf -o tmp/test.twk
GNU gdb (Ubuntu 12.1-0ubuntu1~22.04) 12.1
Copyright (C) 2022 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later http://gnu.org/licenses/gpl.html
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There is NO WARRANTY, to the extent permitted by law.
Type "show copying" and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
Type "show configuration" for configuration details.
For bug reporting instructions, please see:
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Reading symbols from tomahawk...
(gdb) break tomahawk::VcfHeaderInternal::AddContigInfo
Breakpoint 1 at 0x3ef80: file lib/header_internal.cpp, line 17.

Could you help with this?