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However, I'm not able to do so from the Singularity container?
Can you spot what I'm doing wrong?
$ sudo singularity build --sandbox mtoolbox.sif docker://mitongs/mtoolbox:latest
$ singularity run mtoolbox.sif
Singularity> source activate mtoolbox
Could not find conda environment: mtoolbox
You can list all discoverable environments with `conda info --envs`.
The text was updated successfully, but these errors were encountered:
We've migrated to an air-gap system with no outgoing internet connection and I can no longer get
MToolBox
to work.I filed an issue a month ago but haven't heard anything back (mitoNGS/MToolBox#96) so I'm trying to get a container solution working.
However, I need some help getting this to run: https://hub.docker.com/r/mitongs/mtoolbox
It's not clear to me how I can edit/provide-symlinks for
analysis.tab
,datasets.tab
,reference_genomes.tab
and provide the datasets to the container.Question 1:
Can you please help show me how the syntax would look like for that?
Question 2:
I'm able to activate the
mtoolbox
conda environment from theDocker
container:However, I'm not able to do so from the
Singularity
container?Can you spot what I'm doing wrong?
The text was updated successfully, but these errors were encountered: