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I'd like to call variants using human mtDNA. In the reference_genomes.tab, we need to specify ref_genome_mt and ref_genome_n.
I'd like to use hg19 as a reference. I downloaded genome data of hg19, but this genome data include chrM(and chrMT).
Should I remove mtDNA sequence from hg19 genome date when I use hg19 as ref_genome_n?
then Should I speficy rCRS fasta data for ref_genome_mt?
best regards,
The text was updated successfully, but these errors were encountered:
Hi, thank you for this convenient tool.
I'd like to call variants using human mtDNA. In the reference_genomes.tab, we need to specify ref_genome_mt and ref_genome_n.
I'd like to use hg19 as a reference. I downloaded genome data of hg19, but this genome data include chrM(and chrMT).
Should I remove mtDNA sequence from hg19 genome date when I use hg19 as ref_genome_n?
then Should I speficy rCRS fasta data for ref_genome_mt?
best regards,
The text was updated successfully, but these errors were encountered: