"The system cannot find the path specified" and other errors

[MusicalMutant]

here is the log I got after running the program in anaconda prompt:

(base) C:\Users\Username\OneDrive\Desktop\Porter5>pwd
/c/Users/Username/OneDrive/Desktop/Porter5
(base) C:\Users\Username\OneDrive\Desktop\Porter5>Porter5.py -i C:\Users\Username\Desktop\Porter5\example\2FLGA.fasta --setup
Please insert the absolute path to psiblast (e.g., /home/username/psiblast): /c/Users/ Username/OneDrive/Desktop/psiblast
Please insert the absolute path to uniref90 (e.g., /home/username/UniProt/uniref90.fasta): ###
Please insert the call to HHblits (e.g., hhblits): hhblits
Please insert the absolute path to uniprot20 - DATABASE NAME INCLUDED (e.g., /home/username/uniprot20_2016_02/uniprot20_2016_02): /c/Users/ Username/OneDrive/Desktop/uniprot20_2016_02/uniprot20_2016_02
The filename, directory name, or volume label syntax is incorrect.

Setup completed successfully. If you encounter any problems in future, please run "python3 Porter5.py --setup". <<<<<

The system cannot find the path specified.
[main 2022-09-25T18:30:23.102Z] update#setState idle
[main 2022-09-25T18:30:47.275Z] Starting extension host with pid 1776 (fork() took 134 ms).
(node:12820) [DEP0005] DeprecationWarning: Buffer() is deprecated due to security and usability issues. Please use the Buffer.alloc(), Buffer.allocUnsafe(), or Buffer.from() methods instead.
(Use `Code --trace-deprecation ...` to show where the warning was created)
[main 2022-09-25T18:31:09.604Z] update#setState checking for updates
[main 2022-09-25T18:31:09.691Z] update#setState idle
[8132:0925/143215.472:ERROR:gpu_init.cc(481)] Passthrough is not supported, GL is disabled, ANGLE is


After this It then opens visual studio code on a file called process-blast.pl and then seemingly freezes.


and then when I tried to run it again with the added --fast command this happened even though numpy is installed:

(base) C:\Users\Username\OneDrive\Desktop\Porter5>python3 Porter5.py -i C:\Users\Username\OneDrive\Desktop\Porter5\example\2FLGA.fasta --cpu 4 --fast
~~~~~~~~~ Prediction of C:\Users\Username\OneDrive\Desktop\Porter5\example\2FLGA.fasta started ~~~~~~~~~
The process cannot access the file because it is being used by another process.
HHblits executed in 0.61s
Traceback (most recent call last):
  File "C:\Users\Username\OneDrive\Desktop\Porter5\scripts\process-alignment.py", line 12, in <module>
    import numpy
ModuleNotFoundError: No module named 'numpy'
Traceback (most recent call last):
  File "C:\Users\Username\OneDrive\Desktop\Porter5\Porter5.py", line 82, in <module>
    flatpsi_ann = open(filename+".flatpsi.ann", "r").readlines()
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\Username\\OneDrive\\Desktop\\Porter5\\example\\2FLGA.fasta.flatpsi.ann'