Bug fix

Author: mingdeyu

R/plot.R

@@ -59,7 +59,7 @@
 #'   it is recommended to first run [validate()] to obtain and store validation results in the emulator object, and then supply the
 #'   object to [plot()]. [plot()] checks the object's `loo` and `oos` slots prior to calling [validate()] and will not perform further calculation if the required information is already stored.
 #' * [plot()] will only use stored OOS validation if `x_test` and `y_test` are identical to those used by [validate()] to produce the data contained in the object's `oos` slot, otherwise [plot()] will re-evaluate OOS validation before plotting.
-#' * The returned [patchwork] object contains the [ggplot2] objects. One can modify the included individual ggplots
+#' * The returned [patchwork::patchwork] object contains the [ggplot2::ggplot2] objects. One can modify the included individual ggplots
 #'   by accessing them with double-bracket indexing. See <https://patchwork.data-imaginist.com/> for further information.
 #' @details See further examples and tutorials at <`r get_docs_url()`>.
 #' @examples

R/utils.R

@@ -607,8 +607,8 @@ read <- function(pkl_file) {
 #'
 #' @return Either a summary table (returned as `kableExtra` object) or an interactive visualization
 #' (returned as a `visNetwork` object) of the emulator. The visualization is compatible with R Markdown
-#' documents and the RStudio Viewer. The summary table can be further customized by [kableExtra] package.
-#' The resulting [visNetwork] object can be saved as an HTML file using [visNetwork::visSave()].
+#' documents and the RStudio Viewer. The summary table can be further customized by [kableExtra::kableExtra] package.
+#' The resulting `visNetwork` object can be saved as an HTML file using [visNetwork::visSave()] from the [visNetwork::visNetwork] package.
 #'
 #' @details See further examples and tutorials at <`r get_docs_url()`>.
 #' @examples

_pkgdown.yml

@@ -112,6 +112,8 @@ reference:
   - get_thread_num
   - set_vecchia
   - set_id
+  - serialize
+  - deserialize