diff --git a/docs/datacontainers_files/figure-revealjs/data_and_data_container-1.png b/docs/datacontainers_files/figure-revealjs/data_and_data_container-1.png index 0af37bc..8f4bb26 100644 Binary files a/docs/datacontainers_files/figure-revealjs/data_and_data_container-1.png and b/docs/datacontainers_files/figure-revealjs/data_and_data_container-1.png differ diff --git a/docs/datacontainers_files/figure-revealjs/pages_and_book-1.png b/docs/datacontainers_files/figure-revealjs/pages_and_book-1.png index 1c208f8..027b41f 100644 Binary files a/docs/datacontainers_files/figure-revealjs/pages_and_book-1.png and b/docs/datacontainers_files/figure-revealjs/pages_and_book-1.png differ diff --git a/docs/datacontainers_files/figure-revealjs/se_field-1.png b/docs/datacontainers_files/figure-revealjs/se_field-1.png index f6d10da..a1ae0a0 100644 Binary files a/docs/datacontainers_files/figure-revealjs/se_field-1.png and b/docs/datacontainers_files/figure-revealjs/se_field-1.png differ diff --git a/docs/hintikkaxo_presentation_files/figure-revealjs/unnamed-chunk-13-1.png b/docs/hintikkaxo_presentation_files/figure-revealjs/unnamed-chunk-13-1.png index 1cc7ad5..f80b4a8 100644 Binary files a/docs/hintikkaxo_presentation_files/figure-revealjs/unnamed-chunk-13-1.png and b/docs/hintikkaxo_presentation_files/figure-revealjs/unnamed-chunk-13-1.png differ diff --git a/docs/intro.html b/docs/intro.html index ec6ab6b..eff5fcb 100644 --- a/docs/intro.html +++ b/docs/intro.html @@ -402,7 +402,7 @@

Teaching material

Support

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Example 2.3: YAML Parameters

editor: visual

smaller: true

author: Escherichia coli

-

date: 2024-12-17

+

date: 2024-12-18

---

diff --git a/docs/search.json b/docs/search.json index fc78d84..30540b4 100644 --- a/docs/search.json +++ b/docs/search.json @@ -991,7 +991,7 @@ "href": "intro.html#support", "title": "Intro & practicals", "section": "Support", - "text": "Support\n\nPost-it stickers\nOnline chat (Gitter) https://gitter.im/microbiome/miaverse\nGoogle Doc Questions at the end of the gdoc are welcome\nFeedback at the end of each day using minute cards" + "text": "Support\n\nPost-it stickers\nOnline chat (GitHub Discussions) https://github.com/microbiome/OMA/discussions\nGoogle Doc Questions at the end of the gdoc are welcome\nFeedback at the end of each day using minute cards" }, { "objectID": "intro.html#other-points", @@ -1579,7 +1579,7 @@ "href": "quarto.html#example-2.3-yaml-parameters", "title": "Reproducible Reporting with Quarto", "section": "Example 2.3: YAML Parameters", - "text": "Example 2.3: YAML Parameters\nAt the beginning of any Quarto document, there is a box delimited by ---. There you can define document metadata, such as title, author, date, output format, bibliography, citation style, theme, font size and many others.\n---\ntitle: “Around the gut in 24 hours”\nformat: html\neditor: visual\nsmaller: true\nauthor: Escherichia coli\ndate: 2024-12-17\n---" + "text": "Example 2.3: YAML Parameters\nAt the beginning of any Quarto document, there is a box delimited by ---. There you can define document metadata, such as title, author, date, output format, bibliography, citation style, theme, font size and many others.\n---\ntitle: “Around the gut in 24 hours”\nformat: html\neditor: visual\nsmaller: true\nauthor: Escherichia coli\ndate: 2024-12-18\n---" }, { "objectID": "quarto.html#exercise-2", diff --git a/quarto/intro.qmd b/quarto/intro.qmd index d73a42b..ae25ed9 100755 --- a/quarto/intro.qmd +++ b/quarto/intro.qmd @@ -1,12 +1,11 @@ --- title: "Intro & practicals" format: revealjs -editor: visual --- ## Learning goals {.smaller} -::: columns +::::: columns ::: {.column width="70%"} **Introduction to R/Bioconductor, a popular open-source environment for life science informatics, with a focus on microbiome analysis** @@ -22,19 +21,16 @@ After the course, you will know how to: ::: {.column width="30%"} ![Moreno-Indias et al. (2021) Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions. Frontiers in Microbiology.](images/paste-DD45BC4A.png) ::: -::: - +::::: ## Target audience - - Advanced MSc, PhD & postdoctoral researchers who wish to learn new skills in scientific programming - Earlier experience with R is expected ![](images/bioconductor_logo_rgb.jpg){width="200"} - Welcome! ## Code of Conduct {.smaller} @@ -55,7 +51,6 @@ By participating in this community, you agree not to engage in behavior contrary For the full CoC, see: [https://bioconductor.github.io/bioc_coc_multilingual](https://bioconductor.github.io/bioc_coc_multilingual/) - ## Schedule - Day 1: data science framework @@ -86,7 +81,7 @@ For the full CoC, see: [https://bioconductor.github.io/bioc_coc_multilingual](ht - Post-it stickers -- Online chat (Gitter) +- Online chat (GitHub Discussions) - [Google Doc](https://docs.google.com/document/d/1CEQ2d5g-zMoANhtHGbcKbW4DhElovPHz6iChjSX6Md8/edit?usp=sharing) **Questions at the end of the gdoc are welcome** @@ -94,7 +89,6 @@ For the full CoC, see: [https://bioconductor.github.io/bioc_coc_multilingual](ht ![](images/paste-345FB942.png){width="282"} - ## Other points - Basic vs. advanced groups