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hg19_chromosomes is not described #10

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nh13 opened this issue Feb 27, 2018 · 0 comments
Open

hg19_chromosomes is not described #10

nh13 opened this issue Feb 27, 2018 · 0 comments

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@nh13
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nh13 commented Feb 27, 2018

  • hg19_chromosomes/CombinedHG19_Reference.fa is hard-coded in many places (ex. src/reference_vntr.py)
  • chr9.fasta is hard-coded in a supplementary script
  • chromosome names are defined in settings.py, and not using a sequence dictionary (.dict) or fasta index (.fai).
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