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environment.yml
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environment.yml
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name: meet-the-neighbors
channels:
- bioconda
- defaults
- conda-forge
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- abseil-cpp=20211102.0=hd4dd3e8_0
- arrow-cpp=11.0.0=h374c478_2
- aws-c-common=0.6.8=h5eee18b_1
- aws-c-event-stream=0.1.6=h6a678d5_6
- aws-checksums=0.1.11=h5eee18b_2
- aws-sdk-cpp=1.8.185=h721c034_1
- biopython=1.78=py311h5eee18b_0
- blas=1.0=openblas
- bokeh=3.3.0=py311h92b7b1e_0
- boost-cpp=1.82.0=hdb19cb5_2
- bottleneck=1.3.5=py311hbed6279_0
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2023.12.12=h06a4308_0
- click=8.1.7=py311h06a4308_0
- cloudpickle=2.2.1=py311h06a4308_0
- contourpy=1.2.0=py311hdb19cb5_0
- cycler=0.11.0=pyhd3eb1b0_0
- cyrus-sasl=2.1.28=h52b45da_1
- cytoolz=0.12.2=py311h5eee18b_0
- dask=2023.11.0=py311h06a4308_0
- dask-core=2023.11.0=py311h06a4308_0
- dbus=1.13.18=hb2f20db_0
- distributed=2023.11.0=py311h06a4308_0
- expat=2.5.0=h6a678d5_0
- fontconfig=2.14.1=h4c34cd2_2
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.12.1=h4a9f257_0
- fsspec=2023.10.0=py311h06a4308_0
- gawk=5.1.0=h7b6447c_0
- gflags=2.2.2=he6710b0_0
- giflib=5.2.1=h5eee18b_3
- glib=2.69.1=he621ea3_2
- glog=0.5.0=h2531618_0
- grpc-cpp=1.48.2=he1ff14a_1
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- heapdict=1.0.1=pyhd3eb1b0_0
- icu=73.1=h6a678d5_0
- importlib-metadata=6.0.0=py311h06a4308_0
- jinja2=3.1.2=py311h06a4308_0
- joblib=1.2.0=py311h06a4308_0
- jpeg=9e=h5eee18b_1
- kiwisolver=1.4.4=py311h6a678d5_0
- krb5=1.20.1=h143b758_1
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libboost=1.82.0=h109eef0_2
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcups=2.4.2=h2d74bed_1
- libcurl=8.4.0=h251f7ec_1
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h7f8727e_1
- libevent=2.1.12=hdbd6064_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libidn2=2.3.4=h5eee18b_0
- libllvm14=14.0.6=hdb19cb5_3
- libnghttp2=1.57.0=h2d74bed_0
- libopenblas=0.3.21=h043d6bf_0
- libpng=1.6.39=h5eee18b_0
- libpq=12.15=hdbd6064_1
- libprotobuf=3.20.3=he621ea3_0
- libssh2=1.10.0=hdbd6064_2
- libstdcxx-ng=11.2.0=h1234567_1
- libthrift=0.15.0=h1795dd8_2
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.3.2=h11a3e52_0
- libwebp-base=1.3.2=h5eee18b_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=h5eee18b_1
- libxml2=2.10.4=hf1b16e4_1
- locket=1.0.0=py311h06a4308_0
- lz4=4.3.2=py311h5eee18b_0
- lz4-c=1.9.4=h6a678d5_0
- markupsafe=2.1.1=py311h5eee18b_0
- matplotlib=3.8.0=py311h06a4308_0
- matplotlib-base=3.8.0=py311ha02d727_0
- mmseqs2=13.45111=h95f258a_1
- msgpack-python=1.0.3=py311hdb19cb5_0
- munkres=1.0.7=py_1
- mysql=5.7.24=h721c034_2
- ncurses=6.4=h6a678d5_0
- numexpr=2.8.7=py311h812550d_0
- numpy=1.24.3=py311h434b4ae_0
- numpy-base=1.24.3=py311h4367d22_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=3.0.12=h7f8727e_0
- orc=1.7.4=hb3bc3d3_1
- packaging=23.1=py311h06a4308_0
- pandas=2.0.3=py311ha02d727_0
- partd=1.4.1=py311h06a4308_0
- patsy=0.5.3=py311h06a4308_0
- pcre=8.45=h295c915_0
- pillow=10.0.1=py311ha6cbd5a_0
- pip=23.3.1=py311h06a4308_0
- plotly=5.9.0=py311h06a4308_0
- ply=3.11=py311h06a4308_0
- psutil=5.9.0=py311h5eee18b_0
- pyarrow=11.0.0=py311hd8e8d9b_1
- pyparsing=3.0.9=py311h06a4308_0
- pyqt=5.15.10=py311h6a678d5_0
- pyqt5-sip=12.13.0=py311h5eee18b_0
- python=3.11.5=h955ad1f_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-lmdb=1.4.1=py311h6a678d5_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- pytz=2023.3.post1=py311h06a4308_0
- pyyaml=6.0.1=py311h5eee18b_0
- qt-main=5.15.2=h53bd1ea_10
- re2=2022.04.01=h295c915_0
- readline=8.2=h5eee18b_0
- scikit-learn=1.3.0=py311ha02d727_0
- scipy=1.11.4=py311h24aa872_0
- setuptools=68.0.0=py311h06a4308_0
- sip=6.7.12=py311h6a678d5_0
- six=1.16.0=pyhd3eb1b0_1
- snappy=1.1.9=h295c915_0
- sortedcontainers=2.4.0=pyhd3eb1b0_0
- sqlite=3.41.2=h5eee18b_0
- statsmodels=0.14.0=py311hf4808d0_0
- tblib=1.7.0=pyhd3eb1b0_0
- tenacity=8.2.2=py311h06a4308_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.12=h1ccaba5_0
- toolz=0.12.0=py311h06a4308_0
- tornado=6.3.3=py311h5eee18b_0
- tzdata=2023c=h04d1e81_0
- urllib3=2.1.0=py311h06a4308_0
- utf8proc=2.6.1=h27cfd23_0
- wget=1.21.4=h251f7ec_1
- wheel=0.41.2=py311h06a4308_0
- xyzservices=2022.9.0=py311h06a4308_1
- xz=5.4.5=h5eee18b_0
- yaml=0.2.5=h7b6447c_0
- zict=3.0.0=py311h06a4308_0
- zipp=3.11.0=py311h06a4308_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- gffpandas==1.2.0
prefix: /gpfs/data/pirontilab/Students/Madu/miniconda3/envs/meet-the-neighbors