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Linkify only changes the rendering of notes; the markdown files themselves are not modified. Graph View and backlinks require scanning the files in your vault to index all the internal links. Therefore, Linkify links will not show up in Graph View. There isn't a way to do it without changing a core part of how Linkify works, sorry.
This plugin does most of what I want, thank you!
One tiny thing: is it (technically) possible to show the created links in graph view?
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