From 9417105aa650e33d035f424b115135f4f553a7e8 Mon Sep 17 00:00:00 2001 From: Martin Jinye Zhang Date: Fri, 24 Nov 2023 17:48:23 -0500 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 39e738b..3126a67 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ Check out [instructions](https://github.com/martinjzhang/scDRS/issues/2) for mak [Zhang*, Hou*, et al. "Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data"](https://www.nature.com/articles/s41588-022-01167-z), Nature Genetics, 2022. ### Versions -- [v1.0.3](https://github.com/martinjzhang/scDRS/releases/tag/v1.0.3): development version. Fixing a bug of negative values of `ct_mean` when `--adj-prop` and `--cov` are on and there are genes extremely low expression; print `--adj-prop` info in `scdrs compute-score`; check p-value and z-score files that the gene column should have header `GENE`; force index in df_cov and df_score to be str; add --min-genes and --min-cells in CLI for customized filtering. +- [v1.0.3](https://github.com/martinjzhang/scDRS/releases/tag/v1.0.3): development version. Fixing a bug of negative values of `ct_mean` when `--adj-prop` and `--cov` are on and there are genes extremely low expression; print `--adj-prop` info in `scdrs compute-score`; check p-value and z-score files that the gene column should have header `GENE`; force index in df_cov and df_score to be str; add --min-genes and --min-cells in CLI for customized filtering; adjustable FDR threshold for plot_group_stats https://github.com/martinjzhang/scDRS/pull/75. - [v1.0.2](https://github.com/martinjzhang/scDRS/releases/tag/v1.0.2): latest stable version. Bug fixes on `scdrs.util.plot_group_stats`; input checks in `scdrs munge-gs` and `scdrs.util.load_h5ad`. #### Older versions - [v1.0.1](https://github.com/martinjzhang/scDRS/releases/tag/v1.0.1): stable version used in publication. Identical to `v1.0.0` except documentation.