From f9a4e3891f181950644b2329e344bd84dc648163 Mon Sep 17 00:00:00 2001 From: Miguel Lago Date: Fri, 11 Dec 2020 15:24:01 -0500 Subject: [PATCH] Update --- index.html | 11 +++---- latex/index.tex | 7 +++++ latex/refman.tex | 74 ++-------------------------------------------- pipeline_doc | 1 + search/all_72.js | 16 +--------- search/files_72.js | 4 +-- search/search.js | 22 ++------------ 7 files changed, 22 insertions(+), 113 deletions(-) diff --git a/index.html b/index.html index 1420bca..f418fce 100644 --- a/index.html +++ b/index.html @@ -38,9 +38,6 @@
@@ -79,7 +76,11 @@
Victre 2.0 Pipeline Documentation
-
+

Author: Miguel A. Lago

+

DOCUMENTATION

+

You can find the documentation in this link: https://malago86.github.io/victre_docs/annotated.html

+

Report your issues and requests here: https://github.com/malago86/VICTRE_PIPELINE

+
Generated by   diff --git a/latex/index.tex b/latex/index.tex index e69de29..c568c47 100644 --- a/latex/index.tex +++ b/latex/index.tex @@ -0,0 +1,7 @@ +{\bfseries Author}\-: Miguel A. Lago + +\subsection*{D\-O\-C\-U\-M\-E\-N\-T\-A\-T\-I\-O\-N} + +You can find the documentation in this link\-: \href{https://malago86.github.io/victre_docs/annotated.html}{\tt https\-://malago86.\-github.\-io/victre\-\_\-docs/annotated.\-html} + +Report your issues and requests here\-: \href{https://github.com/malago86/VICTRE_PIPELINE}{\tt https\-://github.\-com/malago86/\-V\-I\-C\-T\-R\-E\-\_\-\-P\-I\-P\-E\-L\-I\-N\-E} \ No newline at end of file diff --git a/latex/refman.tex b/latex/refman.tex index 69c6c41..5429661 100644 --- a/latex/refman.tex +++ b/latex/refman.tex @@ -67,8 +67,8 @@ \fancyhead[RO]{\fancyplain{}{\bfseries\thepage}} \fancyfoot[LE]{\fancyplain{}{}} \fancyfoot[CE]{\fancyplain{}{}} -\fancyfoot[RE]{\fancyplain{}{\bfseries\scriptsize Generated on Fri Dec 11 2020 15\-:20\-:18 for Victre 2.\-0 Pipeline by Doxygen }} -\fancyfoot[LO]{\fancyplain{}{\bfseries\scriptsize Generated on Fri Dec 11 2020 15\-:20\-:18 for Victre 2.\-0 Pipeline by Doxygen }} +\fancyfoot[RE]{\fancyplain{}{\bfseries\scriptsize Generated on Fri Dec 11 2020 15\-:23\-:52 for Victre 2.\-0 Pipeline by Doxygen }} +\fancyfoot[LO]{\fancyplain{}{\bfseries\scriptsize Generated on Fri Dec 11 2020 15\-:23\-:52 for Victre 2.\-0 Pipeline by Doxygen }} \fancyfoot[CO]{\fancyplain{}{}} \fancyfoot[RO]{\fancyplain{}{}} \renewcommand{\footrulewidth}{0.4pt} @@ -120,7 +120,7 @@ \vspace*{1cm} {\large Generated by Doxygen 1.8.5}\\ \vspace*{0.5cm} -{\small Fri Dec 11 2020 15:20:18}\\ +{\small Fri Dec 11 2020 15:23:52}\\ \end{center} \end{titlepage} \clearemptydoublepage @@ -132,74 +132,6 @@ %--- Begin generated contents --- \chapter{Main Page} \label{index}\hypertarget{index}{}\input{index} -\chapter{Namespace Index} -\input{namespaces} -\chapter{Hierarchical Index} -\input{hierarchy} -\chapter{Class Index} -\input{annotated} -\chapter{File Index} -\input{files} -\chapter{Namespace Documentation} -\input{namespaceconf} -\input{namespaceget__average__lesion} -\input{namespacerun__pipeline} -\input{namespacerun__pipeline__lesionsizes} -\input{namespacetest__pipeline} -\input{namespacetest__spiculated} -\input{namespaceVictre} -\input{namespaceVictre_1_1Constants} -\input{namespaceVictre_1_1Exceptions} -\input{namespaceVictre_1_1Pipeline} -\chapter{Class Documentation} -\input{structperturb} -\input{classVictre_1_1Pipeline_1_1Pipeline} -\input{classVictre_1_1Exceptions_1_1VictreError} -\chapter{File Documentation} -\input{get__average__lesion_8py} -\input{README_8md} -\input{Victre_2breastMass_2README_8md} -\input{run__pipeline_8py} -\input{run__pipeline__lesionsizes_8py} -\input{test__pipeline_8py} -\input{test__spiculated_8py} -\input{____init_____8py} -\input{breastMass_8cxx} -\input{breastMass_8hxx} -\input{CMakeCCompilerId_8c} -\input{CMakeCXXCompilerId_8cpp} -\input{conf_8py} -\input{Constants_8py} -\input{Exceptions_8py} -\input{Pipeline_8py} -\input{Aunnasha__code__read__inputfile_2FBP__DBTrecon_8c} -\input{cbct__ccode_2FBP__DBTrecon_8c} -\input{Aunnasha__code__read__inputfile_2FBP__DBTrecon_8h} -\input{FBP__DBTrecon_8h} -\input{FBP__DBTrecon__dense__VICTRE_8c} -\input{coneBeam_8c} -\input{coneBeam_8h} -\input{coneBeam__VictreBreast__JUl25_8c} -\input{coneBeam__VictreJul12__breast_8c} -\input{coneBeam__VictreJul12__calibration_8c} -\input{coneBeam__VictreJul6_8c} -\input{coneBeamDBT_8c} -\input{coneBeamDBTJun16_01_07copy_08_8c} -\input{coneBeamDBTJun19_8c} -\input{coneBeamDBTJun23_8c} -\input{coneBeamDBTJun28rpz_8c} -\input{coneBeamJun12_01_07copy_08_8c} -\input{coneBeamJun12_8c} -\input{coneBeamVictreJun30_8c} -\input{olderversiondata_8c} -\input{FBP__DBTrecon__dense__SA_8c} -\input{FBP__DBTrecon__dense__SP_8c} -\input{FBP__DBTrecon__fatty__SA_8c} -\input{FBP__DBTrecon__fatty__SP_8c} -\input{FBP__DBTrecon__hetero__SA_8c} -\input{FBP__DBTrecon__hetero__SP_8c} -\input{FBP__DBTrecon__scattered__SA_8c} -\input{FBP__DBTrecon__scattered__SP_8c} %--- End generated contents --- % Index diff --git a/pipeline_doc b/pipeline_doc index d063dac..d55dd45 100644 --- a/pipeline_doc +++ b/pipeline_doc @@ -869,6 +869,7 @@ FILTER_SOURCE_PATTERNS = # (index.html). This can be useful if you have a project on for instance GitHub # and want to reuse the introduction page also for the doxygen output. +FILE_PATTERNS += *.md *.markdown USE_MDFILE_AS_MAINPAGE = README.md #--------------------------------------------------------------------------- diff --git a/search/all_72.js b/search/all_72.js index 9dcccbb..a1c2c04 100644 --- a/search/all_72.js +++ b/search/all_72.js @@ -1,19 +1,5 @@ var searchData= [ - ['r',['r',['../structperturb.html#a17b885786a6640dd4e9ab2c728355c36',1,'perturb']]], - ['rad',['rad',['../structperturb.html#a10479a25e619975429bac41bab42443f',1,'perturb']]], - ['ramp_5farc',['ramp_arc',['../Aunnasha__code__read__inputfile_2FBP__DBTrecon_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon.c'],['../FBP__DBTrecon__dense__VICTRE_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_dense_VICTRE.c'],['../coneBeam_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeam.c'],['../coneBeam__VictreBreast__JUl25_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeam_VictreBreast_JUl25.c'],['../coneBeam__VictreJul12__breast_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeam_VictreJul12_breast.c'],['../coneBeam__VictreJul12__calibration_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeam_VictreJul12_calibration.c'],['../coneBeam__VictreJul6_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeam_VictreJul6.c'],['../coneBeamDBT_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamDBT.c'],['../coneBeamDBTJun16_01_07copy_08_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamDBTJun16 (copy).c'],['../coneBeamDBTJun19_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamDBTJun19.c'],['../coneBeamDBTJun23_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamDBTJun23.c'],['../coneBeamDBTJun28rpz_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamDBTJun28rpz.c'],['../coneBeamJun12_01_07copy_08_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamJun12 (copy).c'],['../coneBeamJun12_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamJun12.c'],['../coneBeamVictreJun30_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): coneBeamVictreJun30.c'],['../cbct__ccode_2FBP__DBTrecon_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon.c'],['../FBP__DBTrecon__dense__SA_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_dense_SA.c'],['../FBP__DBTrecon__dense__SP_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_dense_SP.c'],['../FBP__DBTrecon__fatty__SA_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_fatty_SA.c'],['../FBP__DBTrecon__fatty__SP_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_fatty_SP.c'],['../FBP__DBTrecon__hetero__SA_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_hetero_SA.c'],['../FBP__DBTrecon__hetero__SP_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_hetero_SP.c'],['../FBP__DBTrecon__scattered__SA_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_scattered_SA.c'],['../FBP__DBTrecon__scattered__SP_8c.html#a1507d21356e4f00b1a7b332175319b52',1,'ramp_arc(double *hval, int n, double ds, double dsd): FBP_DBTrecon_scattered_SP.c']]], - ['ramp_5fflat',['ramp_flat',['../Aunnasha__code__read__inputfile_2FBP__DBTrecon_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon.c'],['../FBP__DBTrecon__dense__VICTRE_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_dense_VICTRE.c'],['../coneBeam_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeam.c'],['../coneBeam__VictreBreast__JUl25_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeam_VictreBreast_JUl25.c'],['../coneBeam__VictreJul12__breast_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeam_VictreJul12_breast.c'],['../coneBeam__VictreJul12__calibration_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeam_VictreJul12_calibration.c'],['../coneBeam__VictreJul6_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeam_VictreJul6.c'],['../coneBeamDBT_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamDBT.c'],['../coneBeamDBTJun16_01_07copy_08_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamDBTJun16 (copy).c'],['../coneBeamDBTJun19_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamDBTJun19.c'],['../coneBeamDBTJun23_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamDBTJun23.c'],['../coneBeamDBTJun28rpz_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamDBTJun28rpz.c'],['../coneBeamJun12_01_07copy_08_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamJun12 (copy).c'],['../coneBeamJun12_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamJun12.c'],['../coneBeamVictreJun30_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): coneBeamVictreJun30.c'],['../cbct__ccode_2FBP__DBTrecon_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon.c'],['../FBP__DBTrecon__dense__SA_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_dense_SA.c'],['../FBP__DBTrecon__dense__SP_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_dense_SP.c'],['../FBP__DBTrecon__fatty__SA_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_fatty_SA.c'],['../FBP__DBTrecon__fatty__SP_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_fatty_SP.c'],['../FBP__DBTrecon__hetero__SA_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_hetero_SA.c'],['../FBP__DBTrecon__hetero__SP_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_hetero_SP.c'],['../FBP__DBTrecon__scattered__SA_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_scattered_SA.c'],['../FBP__DBTrecon__scattered__SP_8c.html#a2d5362d5a53a9b639e226882103df3cb',1,'ramp_flat(double *hval, int n, double ds): FBP_DBTrecon_scattered_SP.c']]], - ['readme_2emd',['README.md',['../Victre_2breastMass_2README_8md.html',1,'']]], ['readme_2emd',['README.md',['../README_8md.html',1,'']]], - ['recon_5fsize',['recon_size',['../classVictre_1_1Pipeline_1_1Pipeline.html#a17245decfa597e911b0c12be88a3fb96',1,'Victre::Pipeline::Pipeline']]], - ['reconstruct',['reconstruct',['../classVictre_1_1Pipeline_1_1Pipeline.html#ab7dbcc6b27ab4e563391e2d76045f609',1,'Victre::Pipeline::Pipeline']]], - ['release',['release',['../namespaceconf.html#a325dc746d8bf05c54d26351c35a21d90',1,'conf']]], - ['roi_5fsizes',['roi_sizes',['../namespacerun__pipeline.html#acbbe35ae536f40bcd740b4fa98cd53a1',1,'run_pipeline.roi_sizes()'],['../namespacerun__pipeline__lesionsizes.html#a3b75350f1aa1a1b47aa8ef34a06809db',1,'run_pipeline_lesionsizes.roi_sizes()'],['../namespacetest__pipeline.html#ac3f90bba6b3ba7eb9c6c5fbf56f3f540',1,'test_pipeline.roi_sizes()'],['../namespacetest__spiculated.html#aee77941f94eca1ddc6507a6dc644320e',1,'test_spiculated.roi_sizes()']]], - ['rois',['rois',['../namespaceget__average__lesion.html#af4a292c67ad6c19a4faf0f86f5aa0f45',1,'get_average_lesion']]], - ['run_5fpipeline',['run_pipeline',['../namespacerun__pipeline.html',1,'']]], - ['run_5fpipeline_2epy',['run_pipeline.py',['../run__pipeline_8py.html',1,'']]], - ['run_5fpipeline_5flesionsizes',['run_pipeline_lesionsizes',['../namespacerun__pipeline__lesionsizes.html',1,'']]], - ['run_5fpipeline_5flesionsizes_2epy',['run_pipeline_lesionsizes.py',['../run__pipeline__lesionsizes_8py.html',1,'']]], - ['runlvl',['runlvl',['../Aunnasha__code__read__inputfile_2FBP__DBTrecon_8h.html#ae92fee15439a2d3de903923e168502d7',1,'runlvl(): FBP_DBTrecon.h'],['../coneBeam_8h.html#ae92fee15439a2d3de903923e168502d7',1,'runlvl(): coneBeam.h'],['../FBP__DBTrecon_8h.html#ae92fee15439a2d3de903923e168502d7',1,'runlvl(): FBP_DBTrecon.h']]] + ['readme_2emd',['README.md',['../Victre_2breastMass_2README_8md.html',1,'']]] ]; diff --git a/search/files_72.js b/search/files_72.js index 9b60238..a1c2c04 100644 --- a/search/files_72.js +++ b/search/files_72.js @@ -1,7 +1,5 @@ var searchData= [ ['readme_2emd',['README.md',['../README_8md.html',1,'']]], - ['readme_2emd',['README.md',['../Victre_2breastMass_2README_8md.html',1,'']]], - ['run_5fpipeline_2epy',['run_pipeline.py',['../run__pipeline_8py.html',1,'']]], - ['run_5fpipeline_5flesionsizes_2epy',['run_pipeline_lesionsizes.py',['../run__pipeline__lesionsizes_8py.html',1,'']]] + ['readme_2emd',['README.md',['../Victre_2breastMass_2README_8md.html',1,'']]] ]; diff --git a/search/search.js b/search/search.js index 834e7b3..1cb9061 100644 --- a/search/search.js +++ b/search/search.js @@ -7,30 +7,14 @@ var indexSectionsWithContent = { - 0: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010111111111001111101110100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 1: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 2: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000001010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 3: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010011011100000001101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 4: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101101101000100101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 5: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111011001111101110100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 6: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 7: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 8: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", - 9: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101101010000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000" + 0: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000", + 1: "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000" }; var indexSectionNames = { 0: "all", - 1: "classes", - 2: "namespaces", - 3: "files", - 4: "functions", - 5: "variables", - 6: "typedefs", - 7: "enums", - 8: "enumvalues", - 9: "defines" + 1: "files" }; function convertToId(search)