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The image format used by tiles in a .czi file is usually JPEG-XR, which is unwieldy for a lot of applications as the image format is not common, which necessitates format conversion. Adding support for czinspect to do this in-line after extraction would remove the need for external tooling to do this after the fact.
The proposed model is to extract a JXR image tile and then fork+exec JxrDecApp from jxrlib to convert to TIFF. Further conversions could then be performed with other programs such as vips or ImageMagick's convert.
The text was updated successfully, but these errors were encountered:
The image format used by tiles in a .czi file is usually JPEG-XR, which is unwieldy for a lot of applications as the image format is not common, which necessitates format conversion. Adding support for
czinspect
to do this in-line after extraction would remove the need for external tooling to do this after the fact.The proposed model is to extract a JXR image tile and then fork+exec
JxrDecApp
fromjxrlib
to convert to TIFF. Further conversions could then be performed with other programs such asvips
or ImageMagick'sconvert
.The text was updated successfully, but these errors were encountered: