awk: program limit exceeded: maximum number of fields size=32767

[rafaeltiveron]

Problem in this script:

${DIR}/assemblies/working/${RUNOUT}.unique.ORP.done:${DIR}/assemblies/${RUNOUT}.ORP.diamond.txt
	awk '{print $$2}' ${DIR}/assemblies/${RUNOUT}.ORP.diamond.txt | awk -F "|" '{print $$3}' | cut -d _ -f2 | sort | uniq | wc -l > ${DIR}/assemblies/working/${RUNOUT}.unique.ORP.txt
	touch ${DIR}/assemblies/working/${RUNOUT}.unique.ORP.done

awk: program limit exceeded: maximum number of fields size=32767
	FILENAME="-" FNR=10081 NR=10081

[rafaeltiveron]

I've substituted awk for gawk. I'll test and tell if it works.

[rafaeltiveron]

Worked!