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<!DOCTYPE html>
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<title>Index — Hi-C-Analysis 0.1.0 documentation</title>
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<h1 id="index">Index</h1>
<div class="genindex-jumpbox">
<a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#D"><strong>D</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#G"><strong>G</strong></a>
| <a href="#H"><strong>H</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#W"><strong>W</strong></a>
</div>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.preprocessing.build_projectors">build_projectors() (in module hicanalysis.preprocessing)</a>
</li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.preprocessing.create_graph">create_graph() (in module hicanalysis.preprocessing)</a>
</li>
</ul></td>
</tr></table>
<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.visualizegraph.degree_distribution">degree_distribution() (in module hicanalysis.visualizegraph)</a>
</li>
</ul></td>
</tr></table>
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.preprocessing.extract_diagonal_blocks">extract_diagonal_blocks() (in module hicanalysis.preprocessing)</a>
</li>
</ul></td>
</tr></table>
<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.preprocessing.get_chromosome_list">get_chromosome_list() (in module hicanalysis.preprocessing)</a>
</li>
</ul></td>
</tr></table>
<h2 id="H">H</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.visualizegraph.histogram">histogram() (in module hicanalysis.visualizegraph)</a>
</li>
</ul></td>
</tr></table>
<h2 id="O">O</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.preprocessing.ooe_normalization">ooe_normalization() (in module hicanalysis.preprocessing)</a>
</li>
</ul></td>
</tr></table>
<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.visualizegraph.plot_chromosome_hics">plot_chromosome_hics() (in module hicanalysis.visualizegraph)</a>
</li>
<li><a href="index.html#hicanalysis.visualizegraph.plot_chromosomes_histograms">plot_chromosomes_histograms() (in module hicanalysis.visualizegraph)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.visualizegraph.plot_matrix">plot_matrix() (in module hicanalysis.visualizegraph)</a>
</li>
<li><a href="index.html#hicanalysis.visualizegraph.plot_matrix_comparison">plot_matrix_comparison() (in module hicanalysis.visualizegraph)</a>
</li>
</ul></td>
</tr></table>
<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.preprocessing.reconstruct_matrix">reconstruct_matrix() (in module hicanalysis.preprocessing)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.preprocessing.remove_empty_axis">remove_empty_axis() (in module hicanalysis.preprocessing)</a>
</li>
</ul></td>
</tr></table>
<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.visualizegraph.scatter_plot">scatter_plot() (in module hicanalysis.visualizegraph)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.visualizegraph.show_10_projectors">show_10_projectors() (in module hicanalysis.visualizegraph)</a>
</li>
</ul></td>
</tr></table>
<h2 id="W">W</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="index.html#hicanalysis.visualizegraph.weights_distribuion">weights_distribuion() (in module hicanalysis.visualizegraph)</a>
</li>
</ul></td>
</tr></table>
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