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Another error this time with fastq files #14

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Pharmacogenetecist opened this issue Sep 28, 2022 · 2 comments
Open

Another error this time with fastq files #14

Pharmacogenetecist opened this issue Sep 28, 2022 · 2 comments

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@Pharmacogenetecist
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Hello there again, I am trying this pipeline again this time with fastq files and I am getting errors.
See attached txt file.
Thank you.

error0928.txt
@lmtani
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lmtani commented Oct 22, 2022

Hi! Sorry for the late answer.

Could you inform how much memory you have available during the task execution? I suspect that the bwa alignment was killed and then the picard merge step (MergeBamAlignment).

@Pharmacogenetecist
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Hi! Sorry for the late answer.

Could you inform how much memory you have available during the task execution? I suspect that the bwa alignment was killed and then the picard merge step (MergeBamAlignment).

64GB

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@lmtani @Pharmacogenetecist