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step2.rst.bak
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|CyVerse logo|_
|Home_Icon|_
`Learning Center Home <http://learning.cyverse.org/>`_
Viewing and Accessing Data
----------------------------
SciApps uses `CyVerse Data Store <https://cyverse-data-store-guide.readthedocs-hosted.com/en/latest/>`_
for user data management. Besides public and shared data, SciApps can only access data placed in your **sci_data** folder. Following steps show how this folder can be created.
----
*Browsing/Navigating CyVerse Data Store on SciApps*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1. Log into CyVerse User portal at https://user.cyverse.org.
2. By default, you will see 'My SERVICES'. If SciApps is not listed, click 'AVAILABLE', then 'REQUEST ACCESS'.
|cyverse_user|
.. Note::
Once requested, SciApps will create the **sci_data** folder in your Data Store home folder. Any data you put in this folder can be used to build workflows. The REQUEST step is one-time operation, and after this, you can log into SciApps directly at https://www.SciApps.org.
3. If SciApps is listed, click 'LAUNCH'.
|sciapps_launch|
4. Load any App form by clicking on an App name in the left panel. For any steps that require an input, click '**or Browse DataStore**' to open the browsing window.
.. tip::
Click **example** to browse example data sets used by public workflows (e.g. example data for MAKER below):
|data_window|
Other tabs include:
- **home**: Your CyVerse Data Store (**sci_data** folder only)
- **shared**: Community data shared with everybody
- **Go up**: Move up one level
- **Refresh**: Reload current folder
5. Check the checkbox in front the file or folder to use it as input, then close the browsing window.
----
*Accessing Data on SciApps*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
There are several ways to organize your data, including CyVerse DE, CyberDuck, and iCommands.
----
1. Access CyVerse DE at https://de.cyverse.org if you want to use a GUI to `upload or download small data <https://pods.iplantcollaborative.org/wiki/display/DEmanual/Uploading+and+Importing+Data+Items+Within+the+DE>`_. You could also use it to organize or share your data
2. For bulk data transfer with CyberDuck, here is the `information <https://pods.iplantcollaborative.org/wiki/display/DS/Using+Cyberduck+for+Uploading+and+Downloading+to+the+Data+Store>`_ to get started
3. For command line users, here is the `documentation <https://pods.iplantcollaborative.org/wiki/display/DS/Using+iCommands>`_ for using iCommands
----
**Fix or improve this documentation:**
- On Github: `Repo link <https://github.com/CyVerse-learning-materials/SciApps_guide/blob/master/step2.rst>`_
- Send feedback: `[email protected] <[email protected]>`_
----
|Home_Icon|_
`Learning Center Home <http://learning.cyverse.org/>`_
.. |CyVerse logo| image:: ./img/cyverse_rgb.png
:width: 500
:height: 100
.. _CyVerse logo: http://learning.cyverse.org/
.. |Home_Icon| image:: ./img/homeicon.png
:width: 25
:height: 25
.. _Home_Icon: http://learning.cyverse.org/
.. |data_window| image:: ./img/sci_apps/data_window.gif
:width: 582
:height: 264
.. |cyverse_user| image:: ./img/sci_apps/cyverse_user.gif
:width: 660
:height: 327
.. |sciapps_launch| image:: ./img/sci_apps/sciapps_launch.gif
:width: 550
:height: 172