Skip to content

Latest commit

 

History

History
215 lines (154 loc) · 8.7 KB

RELEASES.md

File metadata and controls

215 lines (154 loc) · 8.7 KB
Raw

POT Releases

0.6 Year 3

July 2019

This is the first official stable release of POT and this means a jump to 0.6! The library has been used in the wild for a while now and we have reached a state where a lot of fundamental OT solvers are available and tested. It has been quite stable in the last months but kept the beta flag in its Pypi classifiers until now.

Note that this release will be the last one supporting officially Python 2.7 (See https://python3statement.org/ for more reasons). For next release we will keep the travis tests for Python 2 but will make them non necessary for merge in 2020.

The features are never complete in a toolbox designed for solving mathematical problems and research but with the new contributions we now implement algorithms and solvers from 24 scientific papers (listed in the README.md file). New features include a direct implementation of the empirical Sinkhorn divergence , a new efficient (Cython implementation) solver for EMD in 1D and corresponding Wasserstein 1D. We now also have implementations for Unbalanced OT and a solver for Unbalanced OT barycenters. A new variant of Gromov-Wasserstein divergence called Fused Gromov-Wasserstein has been also contributed with exemples of use on structured data and computing barycenters of labeld graphs.

A lot of work has been done on the documentation with several new examples corresponding to the new features and a lot of corrections for the docstrings. But the most visible change is a new quick start guide for POT that gives several pointers about which function or classes allow to solve which specific OT problem. When possible a link is provided to relevant examples.

We will also provide with this release some pre-compiled Python wheels for Linux 64bit on github and pip. This will simplify the install process that before required a C compiler and numpy/cython already installed.

Finally we would like to acknowledge and thank the numerous contributors of POT that has helped in the past build the foundation and are still contributing to bring new features and solvers to the library.

Features

  • Add compiled manylinux 64bits wheels to pip releases (PR #91)
  • Add quick start guide (PR #88)
  • Make doctest work on travis (PR #90)
  • Update documentation (PR #79, PR #84)
  • Solver for EMD in 1D (PR #89)
  • Solvers for regularized unbalanced OT (PR #87, PR#99)
  • Solver for Fused Gromov-Wasserstein (PR #86)
  • Add empirical Sinkhorn and empirical Sinkhorn divergences (PR #80)

Closed issues

  • Issue #59 fail when using "pip install POT" (new details in doc+ hopefully wheels)
  • Issue #85 Cannot run gpu modules
  • Issue #75 Greenkhorn do not return log (solved in PR #76)
  • Issue #82 Gromov-Wasserstein fails when the cost matrices are slightly different
  • Issue #72 Macosx build problem

0.5.0 Year 2

Sep 2018

POT is 2 years old! This release brings numerous new features to the toolbox as listed below but also several bug correction.

Among the new features, we can highlight a non-regularized Gromov-Wasserstein solver, a new greedy variant of sinkhorn,
non-regularized, convolutional (2D) and free support Wasserstein barycenters and smooth and stochastic implementation of entropic OT.

POT 0.5 also comes with a rewriting of ot.gpu using the cupy framework instead of the unmaintained cudamat. Note that while we tried to keed changes to the minimum, the OTDA classes were deprecated. If you are happy with the cudamat implementation, we recommend you stay with stable release 0.4 for now.

The code quality has also improved with 92% code coverage in tests that is now printed to the log in the Travis builds. The documentation has also been greatly improved with new modules and examples/notebooks.

This new release is so full of new stuff and corrections thanks to the old and new POT contributors (you can see the list in the readme).

Features

  • Add non regularized Gromov-Wasserstein solver (PR #41)
  • Linear OT mapping between empirical distributions and 90% test coverage (PR #42)
  • Add log parameter in class EMDTransport and SinkhornLpL1Transport (PR #44)
  • Add Markdown format for Pipy (PR #45)
  • Test for Python 3.5 and 3.6 on Travis (PR #46)
  • Non regularized Wasserstein barycenter with scipy linear solver and/or cvxopt (PR #47)
  • Rename dataset functions to be more sklearn compliant (PR #49)
  • Smooth and sparse Optimal transport implementation with entropic and quadratic regularization (PR #50)
  • Stochastic OT in the dual and semi-dual (PR #52 and PR #62)
  • Free support barycenters (PR #56)
  • Speed-up Sinkhorn function (PR #57 and PR #58)
  • Add convolutional Wassersein barycenters for 2D images (PR #64)
  • Add Greedy Sinkhorn variant (Greenkhorn) (PR #66)
  • Big ot.gpu update with cupy implementation (instead of un-maintained cudamat) (PR #67)

Deprecation

Deprecated OTDA Classes were removed from ot.da and ot.gpu for version 0.5 (PR #48 and PR #67). The deprecation message has been for a year here since 0.4 and it is time to pull the plug.

Closed issues

  • Issue #35 : remove import plot from ot/init.py (See PR #41)
  • Issue #43 : Unusable parameter log for EMDTransport (See PR #44)
  • Issue #55 : UnicodeDecodeError: 'ascii' while installing with pip

0.4 Community edition

15 Sep 2017

This release contains a lot of contribution from new contributors.

Features

  • Automatic notebooks and doc update (PR #27)
  • Add gromov Wasserstein solver and Gromov Barycenters (PR #23)
  • emd and emd2 can now return dual variables and have max_iter (PR #29 and PR #25)
  • New domain adaptation classes compatible with scikit-learn (PR #22)
  • Proper tests with pytest on travis (PR #19)
  • PEP 8 tests (PR #13)

Closed issues

  • emd convergence problem du to fixed max iterations (#24)
  • Semi supervised DA error (#26)

0.3.1

11 Jul 2017

  • Correct bug in emd on windows

0.3 Summer release

7 Jul 2017

  • emd* and sinkhorn* are now performed in parallel for multiple target distributions
  • emd and sinkhorn are for OT matrix computation
  • emd2 and sinkhorn2 are for OT loss computation
  • new notebooks for emd computation and Wasserstein Discriminant Analysis
  • relocate notebooks
  • update documentation
  • clean_zeros(a,b,M) for removimg zeros in sparse distributions
  • GPU implementations for sinkhorn and group lasso regularization

V0.2

7 Apr 2017

  • New dimensionality reduction method (WDA)
  • Efficient method emd2 returns only tarnsport (in paralell if several histograms given)

V0.1.11 New years resolution

5 Jan 2017

  • Add sphinx gallery for better documentation
  • Small efficiency tweak in sinkhorn
  • Add simple tic() toc() functions for timing

V0.1.10

7 Nov 2016

  • numerical stabilization for sinkhorn (log domain and epsilon scaling)

V0.1.9 DA classes and mapping

4 Nov 2016

  • Update classes and examples for domain adaptation
  • Joint OT matrix and mapping estimation

V0.1.7

31 Oct 2016

  • Original Domain adaptation classes

PyPI version 0.1.3

  • pipy works

First pre-release

28 Oct 2016

It provides the following solvers:

  • OT solver for the linear program/ Earth Movers Distance.
  • Entropic regularization OT solver with Sinkhorn Knopp Algorithm.
  • Bregman projections for Wasserstein barycenter [3] and unmixing.
  • Optimal transport for domain adaptation with group lasso regularization
  • Conditional gradient and Generalized conditional gradient for regularized OT.

Some demonstrations (both in Python and Jupyter Notebook format) are available in the examples folder.